View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17901_low_6 (Length: 488)
Name: NF17901_low_6
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_6 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 5537764 - 5538172
Alignment:
| Q |
19 |
tttaactcattcaagattactagaacaaggggctaattttgctcatgattaaactcatacaaatatggcccgataaaataggatttcatcaaaatactga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
5537764 |
tttaactcattcaagattactagaacaaggggctagttttgctcatgattaaactcatacaaatatggcccgttaaaatagaatttcatcaaaatactga |
5537863 |
T |
|
| Q |
119 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacactgatttcttaatcccatcttttgtttcaatttac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5537864 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacatcgatttcttaatcccatcttttgtttcaatttac |
5537963 |
T |
|
| Q |
219 |
gtttcaaaattactacttaaaggtcataataataattataacataggtttgtaagagagaaaaagtttaaggactctacatgctacgttttctacaaaaa |
318 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
5537964 |
gtttcaaaattactactttaaggtcataataataattataacataggtttgtaagagagaaaaagtttaaggactctacatgttatgttttctacaaaaa |
5538063 |
T |
|
| Q |
319 |
tatgattgctgattttgattctttaataataaaaatgacaattagaatactagtaggattcttacttggtgatgataattttgtttagattgtctttgct |
418 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5538064 |
tatgattgatgattttgattctttaataataaaaatgacaataagaatactagtaggattcttacttggtgatgataattttgtcaagattgtctttgct |
5538163 |
T |
|
| Q |
419 |
ctctcttgg |
427 |
Q |
| |
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||||||||| |
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|
| T |
5538164 |
ctctcttgg |
5538172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 9713 - 9305
Alignment:
| Q |
19 |
tttaactcattcaagattactagaacaaggggctaattttgctcatgattaaactcatacaaatatggcccgataaaataggatttcatcaaaatactga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
9713 |
tttaactcattcaagattactagaacaaggggctgattttgctcatgattaaactcatacaaatatggcccgttaaaatagaatttcatcaaaatactga |
9614 |
T |
|
| Q |
119 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacactgatttcttaatcccatcttttgtttcaatttac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
9613 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacatcgatttcttaatcccatcttttgtttcaatttac |
9514 |
T |
|
| Q |
219 |
gtttcaaaattactacttaaaggtcataataataattataacataggtttgtaagagagaaaaagtttaaggactctacatgctacgttttctacaaaaa |
318 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9513 |
gttttaaaattactactttaaggtcataataataattataacataggtttgtaagagagaaaaagtttaaggactctacatgctacattttctacaaaaa |
9414 |
T |
|
| Q |
319 |
tatgattgctgattttgattctttaataataaaaatgacaattagaatactagtaggattcttacttggtgatgataattttgtttagattgtctttgct |
418 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
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| T |
9413 |
tatgattgatgattttgattctttaataataaaaatgacaataagaatactagtaggattcttacttggtaatgataattttgttaagattgtcttttct |
9314 |
T |
|
| Q |
419 |
ctctcttgg |
427 |
Q |
| |
|
||||||||| |
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|
| T |
9313 |
ctctcttgg |
9305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 16421001 - 16420593
Alignment:
| Q |
19 |
tttaactcattcaagattactagaacaaggggctaattttgctcatgattaaactcatacaaatatggcccgataaaataggatttcatcaaaatactga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
16421001 |
tttaactcattcaagattactagaacaaggggctgattttgctcatgattaaactcatacaaatatggcccgttaaaatagaatttcatcaaaatactga |
16420902 |
T |
|
| Q |
119 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacactgatttcttaatcccatcttttgtttcaatttac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
16420901 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacatcgatttcttaatcccatcttttgtttcaatttac |
16420802 |
T |
|
| Q |
219 |
gtttcaaaattactacttaaaggtcataataataattataacataggtttgtaagagagaaaaagtttaaggactctacatgctacgttttctacaaaaa |
318 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16420801 |
gttttaaaattactactttaaggtcataataataattataacataggtttgtaagagagaaaaagtttaaggactctacatgctacattttctacaaaaa |
16420702 |
T |
|
| Q |
319 |
tatgattgctgattttgattctttaataataaaaatgacaattagaatactagtaggattcttacttggtgatgataattttgtttagattgtctttgct |
418 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
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|
| T |
16420701 |
tatgattgatgattttgattctttaataataaaaatgacaataagaatactagtaggattcttacttggtaatgataattttgttaagattgtcttttct |
16420602 |
T |
|
| Q |
419 |
ctctcttgg |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
16420601 |
ctctcttgg |
16420593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 28383596 - 28383210
Alignment:
| Q |
19 |
tttaactcattcaagattactagaacaaggggctaattttgctcatgattaaactcatacaaatatggcccgataaaataggatttcatcaaaatactga |
118 |
Q |
| |
|
|||||||||| || ||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||| | | |||||| ||||| |||||||||| | |
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|
| T |
28383596 |
tttaactcatccaggattactagaaca-ggggctgattttgctcatggttaaactcataaaaatatggccagttgaaatagaatttcttcaaaatactta |
28383498 |
T |
|
| Q |
119 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacactgatttcttaatcccatcttttgtttcaatt-ta |
217 |
Q |
| |
|
| ||||| |||| ||||| |||||| | | |||||||||||| ||||||| |||||||||||||||||| |||| |||||||||| ||||||| | |
|
|
| T |
28383497 |
aagaatga-tcaagtataa-ttttagttgt-aatgaaaattggaataaaattcaacaaagcaacactgattgtttaaccccatcttttcgttcaattcaa |
28383401 |
T |
|
| Q |
218 |
cgtttcaaaattactacttaaaggtcataataataattataacata--ggtttgtaagagagaaaaagtttaaggactctacatgctacgttttctacaa |
315 |
Q |
| |
|
||||||||||||||||| ||| || |||||||| | |||||| | ||| ||| || |||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
28383400 |
attttcaaaattactactttaagatcgtaataata---agaacataaggatttataaaagtgaaagagtttaaggactctacatgctacattttctacaa |
28383304 |
T |
|
| Q |
316 |
aaatatgattgctgattttgattctttaataataaaaatgacaattagaatactagtaggattcttacttggtgatgataattttgtttagatt |
409 |
Q |
| |
|
||||| || | ||||||||||||| ||||||||||| |||||| | |||| |||||||||||||||||||||||||||| | |||| ||||| |
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|
| T |
28383303 |
aaataagaggggtgattttgattctccaataataaaaaggacaataaaaatattagtaggattcttacttggtgatgataactatgttaagatt |
28383210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 28388219 - 28387882
Alignment:
| Q |
19 |
tttaactcattcaagattactagaacaaggggctaattttgctcatgattaaactcatacaaatatggcccgataaaataggatttcatcaaaatactga |
118 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| | | |||||| ||||| |||||||||| | |
|
|
| T |
28388219 |
tttaactcatccaggattactagaacaaggg-ctaattttgctcatggttaaactcataaaaatatggccagttgaaatagaatttcttcaaaatactta |
28388121 |
T |
|
| Q |
119 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacactgatttcttaatcccatcttttgtttcaatttac |
218 |
Q |
| |
|
| |||||| ||| ||||| |||||| | |||||||||||||| ||||||| |||||||||||||||||| |||| |||||||||| ||||||| | |
|
|
| T |
28388120 |
aagaatgat-caagtataa-ttttagttgtaaatgaaaattggaataaaattcaacaaagcaacactgattgtttaaccccatcttttcgttcaattcaa |
28388023 |
T |
|
| Q |
219 |
gttt-caaaattactacttaaaggtcataataataattataacatagg--tttgtaagagagaaaaagtttaaggactctacatgctacgttttctacaa |
315 |
Q |
| |
|
||| |||||||||||||| ||| |||||||||||| |||||| | ||| ||| || |||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
28388022 |
attttcaaaattactactttaagatcataataataag---aacataaggatttataaaagtgaaagagtttaag-actctacatgctacgttttctagaa |
28387927 |
T |
|
| Q |
316 |
aaatatgattgctgattttgattctttaataataaaaatgacaat |
360 |
Q |
| |
|
||||| || | | ||||||||||| ||||||||||| |||||| |
|
|
| T |
28387926 |
aaataagaggggtaattttgattctccaataataaaaaggacaat |
28387882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 28387608 - 28387558
Alignment:
| Q |
372 |
taggattcttacttggtgatgataattttgtttagattgtctttgctctct |
422 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||| |||||||||||| |
|
|
| T |
28387608 |
taggattcttacttggtgatgataactatgttaagattttctttgctctct |
28387558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 3509182 - 3508774
Alignment:
| Q |
19 |
tttaactcattcaagattactagaacaaggggctaattttgctcatgattaaactcatacaaatatggcccgataaaataggatttcatcaaaatactga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
3509182 |
tttaactcattcaagattactagaacaaggggctgattttgctcatgattaaactcatacaaatatggcccgttaaaatagaatttcatcaaaatactga |
3509083 |
T |
|
| Q |
119 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacactgatttcttaatcccatcttttgtttcaatttac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3509082 |
gataatgattcaaatataacttttagatctaaatgaaaattggtgtaaaatttaacaaagcaacatcgatttcttaatcccatcttttgtttcaatttac |
3508983 |
T |
|
| Q |
219 |
gtttcaaaattactacttaaaggtcataataataattataacataggtttgtaagagagaaaaagtttaaggactctacatgctacgttttctacaaaaa |
318 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
3508982 |
gtttcaaaattactactttaaggtcataataataattataacataggtttgtaagagagaaaaagtttaaggactctacatgttatgttttctacaaaaa |
3508883 |
T |
|
| Q |
319 |
tatgattgctgattttgattctttaataataaaaatgacaattagaatactagtaggattcttacttggtgatgataattttgtttagattgtctttgct |
418 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |
|
|
| T |
3508882 |
tatgattgatgattttgattctttaataataaaaatgacaataagaatactagtaggattcttacttggtgatgataattttgttaagattgacttttct |
3508783 |
T |
|
| Q |
419 |
ctctcttgg |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
3508782 |
ctctcttgg |
3508774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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