View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_60 (Length: 226)
Name: NF17901_low_60
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 11231524 - 11231719
Alignment:
| Q |
16 |
cacagaaatggataactcgttgcgatatgagaatgtggaagtgtttggaattgaattgcatggattctgaatacaaaaattgagtttcattatcttctca |
115 |
Q |
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| T |
11231524 |
cacagaaatggataactcgttgcgatatgagaatgtggaagtgtttg-aattgaattgcatggattctgaatacaaaaattgagtttcattatcttctca |
11231622 |
T |
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| Q |
116 |
ttattgattaataatttaacatagttttagaattgtgaaagtaaattttggtgtgagtcttgttttgctcaatttgataatcattgcatgaaaatta |
212 |
Q |
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| T |
11231623 |
ttattgattaataatttaacatagttttagaattgtgaaagtaaattttggtgtgagtcttgttttgctcaatttgataatcattgcatgaaaatta |
11231719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 11243664 - 11243714
Alignment:
| Q |
86 |
atacaaaaattgagtttcattatcttctcattattgattaataatttaaca |
136 |
Q |
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| T |
11243664 |
atacaaaaagtgagtttcattatcttctcattattgattaataatttaaca |
11243714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 11243595 - 11243635
Alignment:
| Q |
45 |
agaatgtggaagtgtttggaattgaattgcatggattctgaa |
86 |
Q |
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| T |
11243595 |
agaatgtggaagtgtttg-aattgaattgtatggattctgaa |
11243635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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