View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17901_low_61 (Length: 218)
Name: NF17901_low_61
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_61 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 38089818 - 38089632
Alignment:
| Q |
14 |
aatactacaaacatggaggagaaaatagcacaagcaagactcaaaactaaaacatcttagatgaatataatgccttnnnnnnnnnnnnatacaaattctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38089818 |
aatactacaaacatggaggagaaaatagcacaagcaagactcaaaactaaaacatcttagatgaatataatgcctttatatatata--atacaaattctt |
38089721 |
T |
|
| Q |
114 |
cttccttggtattaaacatatgaccaaaatttaaactatagtttacaaaacttaatgaagtggagtatttttcttttatatgcaccgtg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089720 |
cttccttggtattaaacatatgaccaaaatttaaactatagtttacaaaacttaatgaagtggagtatttttcttttatatgcaccgtg |
38089632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University