View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17901_low_7 (Length: 469)

Name: NF17901_low_7
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17901_low_7
NF17901_low_7
[»] chr3 (8 HSPs)
chr3 (18-461)||(34545252-34545719)
chr3 (227-402)||(32925138-32925314)
chr3 (234-407)||(1721707-1721881)
chr3 (231-407)||(25110228-25110405)
chr3 (249-401)||(1495194-1495345)
chr3 (214-400)||(20497526-20497713)
chr3 (227-383)||(41942552-41942709)
chr3 (227-316)||(46555678-46555768)
[»] chr5 (4 HSPs)
chr5 (214-409)||(3549232-3549428)
chr5 (217-310)||(7968275-7968369)
chr5 (321-407)||(8232212-8232299)
chr5 (214-306)||(27111444-27111529)
[»] chr8 (4 HSPs)
chr8 (202-407)||(41302732-41302938)
chr8 (192-407)||(32331921-32332138)
chr8 (218-354)||(27428091-27428228)
chr8 (248-404)||(43190518-43190674)
[»] chr1 (7 HSPs)
chr1 (234-407)||(12975440-12975614)
chr1 (231-384)||(7504661-7504815)
chr1 (234-407)||(33929205-33929378)
chr1 (192-409)||(37502336-37502553)
chr1 (260-334)||(43239979-43240051)
chr1 (404-440)||(7504548-7504584)
chr1 (404-440)||(37502243-37502279)
[»] chr4 (5 HSPs)
chr4 (254-358)||(15640176-15640280)
chr4 (296-401)||(9964429-9964534)
chr4 (296-407)||(43859656-43859767)
chr4 (216-249)||(15639925-15639958)
chr4 (404-440)||(10406585-10406621)
[»] chr6 (1 HSPs)
chr6 (218-389)||(3064439-3064611)
[»] chr2 (2 HSPs)
chr2 (259-407)||(36284736-36284884)
chr2 (404-457)||(36284624-36284677)
[»] chr7 (5 HSPs)
chr7 (214-277)||(26423656-26423720)
chr7 (404-440)||(18702720-18702756)
chr7 (332-402)||(18702603-18702673)
chr7 (325-407)||(29371271-29371353)
chr7 (214-257)||(18702551-18702595)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 34545252 - 34545719
Alignment:
Q  18 aagtaagcagaacactcttctcatagcaatgtggcggtcaagaggaccccaaccaagcaaattaaaatagtatagatggatagccttgaccnnnnnnnnn 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||             
T  34545252 aagtaagcagaacactcttctcatagcaatgtggcggtcaagaggaccccaaccaagcaaattaaaatagtatagatggatagacttgaccaaataaaa- 34545350  T
Q  118 ntagcatagatac-------gcataaataaattattttagtacaaaaaacacattatatgatataaggggatttaaataagttttatttttgttacatgt 210  Q
     |||||||||||        ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34545351 -tagcatagatagattacatgcataaataaattattttagtaccaaaaacacattatatgatataaggggatttaaataagttttatttttgttacatgg 34545449  T
Q  211 gataaga---------------aaaagaagtaaagaaaaactacgtcctaataaggacactcccatagcatcagctagtaagactgaagatatacatggg 295  Q
    |||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |    
T  34545450 gataagaaaaagaaacaaaagaaaaagaagtaaagaaaaactacgtcctaataaggacactcccatagcatcagctagtaaggctgaagatagacatgag 34545549  T
Q  296 aatggttgatgtatcatcacatgagactctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatga 395  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  34545550 aatggttgatgtaccatcacatgagactctaaatgattagcacctaattttgtaagtatatatgagcaagagtttccttctcaaaaaatttgatgaatgg 34545649  T
Q  396 aaatatctcacttcctttgacactaaatgcactgcatgaagag----agaaaaacaaatcagtttcatat 461  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  34545650 aaatatctcacttcctttgacactaaatgcactgcatgaagagagtaagaaaaacaaatcagtttcatat 34545719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 227 - 402
Target Start/End: Original strand, 32925138 - 32925314
Alignment:
Q  227 aaagaaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactct 325  Q
    |||||||||||| |||||||||| ||||||||| |||| |||||||||||||  ||| |||| |||||  ||||||||||| | ||||||| ||||||||    
T  32925138 aaagaaaaactatgtcctaataaaggacactcctatagtatcagctagtaagggtgaggataaacatgataatggttgatgcaccatcacaagagactct 32925237  T
Q  326 gaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatc 402  Q
    ||| ||||| |||||||||||| |||||||||||||||||||||| |||||| |||||| |||||||||||||||||    
T  32925238 gaaagattaacacctagttttgcaagtatatatgcgcaagagttttcttctcgaaaaatatgatgaatgaaaatatc 32925314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 234 - 407
Target Start/End: Original strand, 1721707 - 1721881
Alignment:
Q  234 aactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactctgaatgat 332  Q
    |||||||||||||||| |||||||||  ||||||||||||||||| || | |||| |||||  ||||||||||| | ||||||| |||| ||||||||||    
T  1721707 aactacgtcctaataaaggacactcctgtagcatcagctagtaaggctaaggatagacatgataatggttgatgcaccatcacaagagattctgaatgat 1721806  T
Q  333 tagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatctcact 407  Q
    || ||||| |||||| |||||||| |||| |||||||||| |||| |||||| ||||||||| ||||||| ||||    
T  1721807 taacaccttgttttgcaagtatatctgcgtaagagtttccctctctaaaaatatgatgaatggaaatatcccact 1721881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 231 - 407
Target Start/End: Complemental strand, 25110405 - 25110228
Alignment:
Q  231 aaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactctgaat 329  Q
    ||||||||||||||||||| ||||||| ||||| |||  |||| ||||  ||| |||| | |||  |||||||||| |||||||||| |||| |||||||    
T  25110405 aaaaactacgtcctaataaaggacacttccataacatgcgctaataaggttgatgatagatatgataatggttgatatatcatcacaagagattctgaat 25110306  T
Q  330 gattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatctcact 407  Q
    ||||||||| || ||||  ||||||||  |||||||||||||||||||||||||| |||| |||||||||||||||||    
T  25110305 gattagcacataattttacaagtatatccgcgcaagagtttccttctcaaaaaatatgataaatgaaaatatctcact 25110228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 249 - 401
Target Start/End: Complemental strand, 1495345 - 1495194
Alignment:
Q  249 aggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactctgaatgattagcacctagttttgt 348  Q
    ||||||||| ||| |||||| ||||||||  |||  ||| |||||| ||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||    
T  1495345 aggacactctcatcgcatcaactagtaaggttgagaatagacatggtaatggttgatgtaccatcacaagagactctgaatgattagcatctaattttgt 1495246  T
Q  349 aagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatat 401  Q
    ||||||||  |||||||||||| |||||  |||||| ||||||||||||||||    
T  1495245 aagtatatccgcgcaagagttttcttct-gaaaaatatgatgaatgaaaatat 1495194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 214 - 400
Target Start/End: Complemental strand, 20497713 - 20497526
Alignment:
Q  214 aagaaaaagaagtaaagaaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcat 312  Q
    |||||||||||| ||||||||||||| |  |||||| || ||||| ||||||||||  ||||||| |||| |||| |||||| ||||||||||||| |||    
T  20497713 aagaaaaagaagcaaagaaaaactacattataataaagggcactctcatagcatcaattagtaaggctgaggatagacatggtaatggttgatgtaccat 20497614  T
Q  313 cacatgagactctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaata 400  Q
    ||   ||||||||  |||||||||||||||||||| |||||| |   |||||||||||||||||  |||||| || |||||| |||||    
T  20497613 catgagagactcttgatgattagcacctagttttgcaagtatgtcgacgcaagagtttccttcttgaaaaatatggtgaatggaaata 20497526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 383
Target Start/End: Original strand, 41942552 - 41942709
Alignment:
Q  227 aaagaaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactct 325  Q
    |||||||||||||||| |||||| ||||| ||  ||| |||||||||||||| |||| |||| |||||   |||||||||| | |||||||   |||| |    
T  41942552 aaagaaaaactacgtcataataaaggacattcttataacatcagctagtaaggctgacgatagacatgatgatggttgatgcaccatcacaaatgacttt 41942651  T
Q  326 gaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaa 383  Q
    || |||||| ||||||||||   || |||||||| ||||||||||| ||||| |||||    
T  41942652 gattgattaacacctagtttatcaactatatatgtgcaagagtttcattctcgaaaaa 41942709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 46555678 - 46555768
Alignment:
Q  227 aaagaaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcaca 316  Q
    ||||||||||||| ||||||||| ||||||| |||||| ||| ||||||||| || |||||| ||| || ||||||||||||| |||||||    
T  46555678 aaagaaaaactacatcctaataaaggacacttccatagaatcggctagtaaggctaaagatagacacggtaatggttgatgtaccatcaca 46555768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 214 - 409
Target Start/End: Complemental strand, 3549428 - 3549232
Alignment:
Q  214 aagaaaaagaagtaaagaaaaactacgtcctaataagga-cactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcat 312  Q
    ||||||||||||||||||||||||||||| |||||| || || ||||||||||| || ||||||  |||| || | |||||  |||| |||||||| |||    
T  3549428 aagaaaaagaagtaaagaaaaactacgtcataataaagaacattcccatagcattagttagtaaagctgatgaaagacatgataatgattgatgtaccat 3549329  T
Q  313 cacatgagactctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatctcacttc 409  Q
    |||| |||||||||||| ||||||||||||||||  ||||| |||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||    
T  3549328 cacaagagactctgaataattagcacctagttttaaaagtagatatgcgcaagagtttccttctaaaaaaatatgatgaatggaaatatcccacttc 3549232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 7968275 - 7968369
Alignment:
Q  217 aaaaagaagtaaagaaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatc 310  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||  |||| |||| |||||  |||||||| ||||||    
T  7968275 aaaaaaaagcaaagaaaaactacgtcctaataaaggacactccaatagcatcagctagtaaagctgaggatagacatgataatggttggtgtatc 7968369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 407
Target Start/End: Complemental strand, 8232299 - 8232212
Alignment:
Q  321 actctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaat-ttgatgaatgaaaatatctcact 407  Q
    ||||||| ||||||||||||| ||||| ||||||||   |||||||||||||||||| ||||||   ||||||||||||||| |||||    
T  8232299 actctgactgattagcacctaattttgcaagtatatccacgcaagagtttccttctctaaaaataacgatgaatgaaaatatttcact 8232212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 27111529 - 27111444
Alignment:
Q  214 aagaaaaagaagtaaagaaaaactacgtcctaataaggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatg 306  Q
    |||||||||||| |||||||||||||||||||       |||||| ||||||||||||| ||||||||| |||| |||||  |||||||||||    
T  27111529 aagaaaaagaagcaaagaaaaactacgtccta-------cactcctatagcatcagctaataagactgaggataaacatgataatggttgatg 27111444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 202 - 407
Target Start/End: Original strand, 41302732 - 41302938
Alignment:
Q  202 gttacatgtgataagaaaaagaagtaaagaaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatgg 300  Q
    |||||||| || || ||||| ||  ||| ||||||||||||||||||| |||||||||  ||||||||||||||||| || | |||| |||||  |||||    
T  41302732 gttacatgagaaaaaaaaaataataaaaaaaaaactacgtcctaataaaggacactcctgtagcatcagctagtaaggctaaggatagacatgataatgg 41302831  T
Q  301 ttgatgtatcatcacatgagactctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaata 400  Q
    |||||| | ||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||||| |||| |||||| ||||||||| |||||    
T  41302832 ttgatgcaccatcacaagagactctgattgattagcaccttgttttgcaagtatatatgcgcaagagtttccctctctaaaaatatgatgaatggaaata 41302931  T
Q  401 tctcact 407  Q
    || ||||    
T  41302932 tcccact 41302938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 192 - 407
Target Start/End: Complemental strand, 32332138 - 32331921
Alignment:
Q  192 ttttatttttgttacatgtgataagaaaa-agaagtaaagaaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatata 289  Q
    |||| ||||||||||||| || || |||| | ||| ||| ||||||||||||||||||| ||||||||   ||||||||||||||||  || |||||| |    
T  32332138 ttttttttttgttacatgagaaaaaaaaacaaaagaaaaaaaaaactacgtcctaataaaggacactcttgtagcatcagctagtaaagctaaagataga 32332039  T
Q  290 catgggaatggttgatgtatcatcacatgagactctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgat 389  Q
    ||||  ||||||||||| | ||||||| |||| ||||| ||||||| |||| |||||| |||||||| ||||||||||||||| |||| |||||| ||||    
T  32332038 catgataatggttgatgcaccatcacaagagattctgattgattagtaccttgttttgcaagtatatctgcgcaagagtttccctctctaaaaatatgat 32331939  T
Q  390 gaatgaaaatatctcact 407  Q
    ||||| ||||||||||||    
T  32331938 gaatggaaatatctcact 32331921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 218 - 354
Target Start/End: Original strand, 27428091 - 27428228
Alignment:
Q  218 aaaagaagtaaagaaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcaca 316  Q
    |||| ||| ||||||||||||||||||||||| ||||||||| |||||||||  ||||||| || | |||| |||||| ||| |||||||   |||||||    
T  27428091 aaaaaaagcaaagaaaaactacgtcctaataaaggacactcctatagcatcaattagtaaggctaaggatagacatggtaatagttgatgagccatcaca 27428190  T
Q  317 tgagactctgaatgattagcacctagttttgtaagtat 354  Q
     ||| | |||||||||| ||||||||||||| ||||||    
T  27428191 agaggccctgaatgattggcacctagttttgcaagtat 27428228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 404
Target Start/End: Complemental strand, 43190674 - 43190518
Alignment:
Q  248 aaggacactcccatagcatcagctagtaagactgaagatat-acatgggaatggttgatgtatcatcacatgagactctgaatgattagcacctagtttt 346  Q
    ||||||||||| ||| |||||| |||||||  ||| || || || ||| ||||||||||| || ||| || |||| |||||||||||||||  |  |||     
T  43190674 aaggacactcctataacatcagatagtaaggttga-gaaatgacgtggtaatggttgatgcattatcgcaagagaatctgaatgattagcatgtcattta 43190576  T
Q  347 gtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatctc 404  Q
    | ||| |||| ||||||  |||||||||| |||||||| |||||||||||| ||||||    
T  43190575 gcaagcatatttgcgcagtagtttccttcccaaaaaatgtgatgaatgaaagtatctc 43190518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 407
Target Start/End: Original strand, 12975440 - 12975614
Alignment:
Q  234 aactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactctgaatgat 332  Q
    |||||||||||||||| |||||||||  ||||||||||||||||| || | ||||  || |  ||||||||||| ||||||||| ||||||||||||| |    
T  12975440 aactacgtcctaataaaggacactcctgtagcatcagctagtaaggctaaggatagtcaagataatggttgatgcatcatcacaagagactctgaatgct 12975539  T
Q  333 tagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatctcact 407  Q
    ||||||||||||||| || |||||  ||||||||||||||  ||| |||||| ||||||||| ||||||| ||||    
T  12975540 tagcacctagttttgcaaatatatccgcgcaagagtttcccactctaaaaatatgatgaatggaaatatcccact 12975614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 384
Target Start/End: Complemental strand, 7504815 - 7504661
Alignment:
Q  231 aaaaactacgtcctaataa-ggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactctgaat 329  Q
    |||||||| |||||||||| ||||||||   |||||||| |||||||| || | |||| |||||| ||||||||||| ||||||||| |||| |||||||    
T  7504815 aaaaactatgtcctaataaaggacactcatgtagcatcatctagtaaggctaacgatagacatggtaatggttgatgcatcatcacaagagattctgaat 7504716  T
Q  330 gattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaat 384  Q
     |||| |||||||||| | ||||||||  || |||||||||||||||| ||||||    
T  7504715 aattaacacctagtttagcaagtatatccgcacaagagtttccttctcgaaaaat 7504661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 407
Target Start/End: Complemental strand, 33929378 - 33929205
Alignment:
Q  234 aactacgtcctaat-aaggacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactctgaatgat 332  Q
    |||||||||||||| ||||||||||   ||||||| ||||||||| || | |||| |||||  |||||||||   ||||||||| |||||| |||||| |    
T  33929378 aactacgtcctaataaaggacactcatgtagcatcggctagtaaggctaaggatagacatgataatggttgacacatcatcacaagagactttgaatgct 33929279  T
Q  333 tagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatctcact 407  Q
    ||||| ||||||||| || |||||  |||||||| |||||  ||| |||||| ||||||||| ||||||| ||||    
T  33929278 tagcatctagttttgcaaatatatccgcgcaagattttcc-cctctaaaaatatgatgaatggaaatatcccact 33929205  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 409
Target Start/End: Complemental strand, 37502553 - 37502336
Alignment:
Q  192 ttttatttttgttacatgtgataag-aaaaagaagtaaagaaaaactacgtcctaataag-gacactcccatagcatcagctagtaagactgaagatata 289  Q
    |||| ||||| ||||||| || ||| ||||||||  |||||||||| |||||  |||||  | || || |||||||||| ||||||||  | |||||| |    
T  37502553 tttttttttttttacatgagagaaggaaaaagaacaaaagaaaaaccacgtctaaataaatgtcattctcatagcatca-ctagtaaggttaaagataaa 37502455  T
Q  290 catgggaatggttgatgtatcatcacatgagactctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgat 389  Q
      ||| ||||||||||||| ||||| | |||| |||||||||||||||  || ||||| |||||||| |  ||||  |||| |||||| |||||| ||||    
T  37502454 tgtggtaatggttgatgtaccatcataagagattctgaatgattagcatatacttttgcaagtatatct-agcaaaggttttcttctcgaaaaatatgat 37502356  T
Q  390 gaatgaaaatatctcacttc 409  Q
    |||||||||||| |||||||    
T  37502355 gaatgaaaatatttcacttc 37502336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 43239979 - 43240051
Alignment:
Q  260 atagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactctgaatgatta 334  Q
    ||||||||| ||| || ||||||||||||| |||| ||||||||||||| |||  || |||||||| ||||||||    
T  43239979 atagcatcaactaatatgactgaagatatatatggtaatggttgatgtaccat--caagagactctaaatgatta 43240051  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 7504584 - 7504548
Alignment:
Q  404 cacttcctttgacactaaatgcactgcatgaagagag 440  Q
    |||||| |||||||||||||||||| |||||||||||    
T  7504584 cacttcttttgacactaaatgcactacatgaagagag 7504548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 37502279 - 37502243
Alignment:
Q  404 cacttcctttgacactaaatgcactgcatgaagagag 440  Q
    |||||||||||||||||||| |||| |||||||||||    
T  37502279 cacttcctttgacactaaatacactacatgaagagag 37502243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 15640176 - 15640280
Alignment:
Q  254 actcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactctgaatgattagcacctagttttgtaagta 353  Q
    ||||||||| |||||||||||||  |||| |||| |||||  ||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||    
T  15640176 actcccataacatcagctagtaaagctgaggatagacatgataatggttgatgtatcatcacaagagactctgaatgattaacacctacttttgcaagta 15640275  T
Q  354 tatat 358  Q
    |||||    
T  15640276 tatat 15640280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 9964534 - 9964429
Alignment:
Q  296 aatggttgatgtatcatcacatgagactctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatga 395  Q
    ||||||||||||| ||||||| |||||||| |||||||| |||||| |||| ||| |||||    ||||||| |||||||||||||||| |||||||||     
T  9964534 aatggttgatgtaccatcacaagagactctaaatgattatcacctaattttttaaatatattcatgcaagagcttccttctcaaaaaatatgatgaatgg 9964435  T
Q  396 aaatat 401  Q
    ||||||    
T  9964434 aaatat 9964429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 407
Target Start/End: Original strand, 43859656 - 43859767
Alignment:
Q  296 aatggttgatgtatcatcacatgagactctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatga 395  Q
    ||||||||||| | ||||||| |||||||| ||| | ||  || |||||| | || ||||| ||||| |||||||||||||| ||||||  ||||||||     
T  43859656 aatggttgatgcaccatcacaagagactctaaattagtaatacatagtttagcaaatatatttgcgctagagtttccttctcgaaaaatacgatgaatgg 43859755  T
Q  396 aaatatctcact 407  Q
    ||||||||||||    
T  43859756 aaatatctcact 43859767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 15639925 - 15639958
Alignment:
Q  216 gaaaaagaagtaaagaaaaactacgtcctaataa 249  Q
    |||||||||| |||||||||||||||||||||||    
T  15639925 gaaaaagaagcaaagaaaaactacgtcctaataa 15639958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 10406621 - 10406585
Alignment:
Q  404 cacttcctttgacactaaatgcactgcatgaagagag 440  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  10406621 cactttctttgacactaaatgcactacatgaagagag 10406585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 389
Target Start/End: Original strand, 3064439 - 3064611
Alignment:
Q  218 aaaagaagtaaagaaaaactacgtcctaataag-gacactcccatagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcaca 316  Q
    |||| ||| |||||||||||||||| ||||||  || ||||  ||||||||| ||| |||  |||| || | |||||  ||||||||||| | ||| | |    
T  3064439 aaaaaaagcaaagaaaaactacgtcataataaatgatactcttatagcatcaactaataaagctgaggacaaacatgataatggttgatgcaccataaaa 3064538  T
Q  317 tgagactctgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgat 389  Q
      ||||| |||||||||| |||||| ||||| | ||||||||||||| |||||||||||||| ||||| ||||    
T  3064539 aaagactttgaatgattaacacctaattttgcaggtatatatgcgcacgagtttccttctcataaaatatgat 3064611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 407
Target Start/End: Complemental strand, 36284884 - 36284736
Alignment:
Q  259 catagcatcagctagtaagactgaagatatacatgggaatggttgatgtatcatcacatgagactctgaatgattagcacctagttttgtaagtatatat 358  Q
    ||||||||||  |||||||||| | |||| |||| | |||||||  || ||||||||| || | | | |||||||| | |||| ||| | ||||||||      
T  36284884 catagcatcacttagtaagactaatgatagacatagtaatggttagtgcatcatcacaagatattttaaatgattatcccctaatttagcaagtatatgc 36284785  T
Q  359 gcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatctcact 407  Q
    |||||||||||| |||| | |||||| ||||||||| ||||||||||||    
T  36284784 gcgcaagagttttcttcgcgaaaaatatgatgaatggaaatatctcact 36284736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 36284677 - 36284624
Alignment:
Q  404 cacttcctttgacactaaatgcactgcatgaagagagaaaaacaaatcagtttc 457  Q
    |||||||||||||||||||| |||| ||| ||||||| |||| ||| |||||||    
T  36284677 cacttcctttgacactaaatacactacataaagagagtaaaaaaaaacagtttc 36284624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 26423720 - 26423656
Alignment:
Q  214 aagaaaaagaagtaaagaaaaactacgtcctaataa-ggacactcccatagcatcagctagtaag 277  Q
    |||||||||||| ||||||||||||||||||||||| ||||| || |||| |||| |||||||||    
T  26423720 aagaaaaagaagcaaagaaaaactacgtcctaataatggacattctcataacatcggctagtaag 26423656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 18702720 - 18702756
Alignment:
Q  404 cacttcctttgacactaaatgcactgcatgaagagag 440  Q
    ||||||||||||||||||||||||| |||||||||||    
T  18702720 cacttcctttgacactaaatgcactacatgaagagag 18702756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 402
Target Start/End: Original strand, 18702603 - 18702673
Alignment:
Q  332 ttagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatc 402  Q
    |||||||||||||||| ||||||||  | |||||||||| |||||| |||||  |  ||||||||||||||    
T  18702603 ttagcacctagttttgcaagtatatcggggcaagagtttacttctcgaaaaacattgtgaatgaaaatatc 18702673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 407
Target Start/End: Complemental strand, 29371353 - 29371271
Alignment:
Q  325 tgaatgattagcacctagttttgtaagtatatatgcgcaagagtttccttctcaaaaaatttgatgaatgaaaatatctcact 407  Q
    |||||||||| |||||| |||||||  ||||| |||| || | |||  || || |||||| ||||||||||||||||||||||    
T  29371353 tgaatgattaacacctaattttgtatttatatctgcgtaaaaattttattttcgaaaaatatgatgaatgaaaatatctcact 29371271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 18702551 - 18702595
Alignment:
Q  214 aagaaaaagaagtaaagaaaaactacgtcctaat-aaggacactc 257  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||    
T  18702551 aagaaaaagaagcaaagcaaaactacgtcctaataaaggacactc 18702595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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