View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_9 (Length: 456)
Name: NF17901_low_9
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Complemental strand, 21097849 - 21097424
Alignment:
| Q |
15 |
cataggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattttcttccaatcttaggactataactacatgta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21097849 |
cataggttcacaaccataagaccaatcattaggattgttcattctataccctggaatacaagagcattttcttccaatcttaggactataactacatgta |
21097750 |
T |
|
| Q |
115 |
ctattagctccacaaattccatgaactaaacaagtacctgtaaaggcttgccatgaaacataccaattctgtgacacattagttctgctatacactctca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21097749 |
ctattagctccacaaattccatgaactaaacaagtacctgtaaaggcttgccatgaaacataccaattctgtgacacattcgttctgctatacactctca |
21097650 |
T |
|
| Q |
215 |
caacaccatcagaatccaatttcatcattctttgcataacagttccataatcagaagttgaaaaagtgaaattatctgatgaatggaaactaccaaaaga |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21097649 |
caacaccatcagaatccaatttcatcattctttgcagaacagttccataatcagaagttgaaaaagtgaaattatctgatgaatggaaactaccaaaaga |
21097550 |
T |
|
| Q |
315 |
atccaacactgcatttctgctactattgaaattagatctgccaacatcccaacttagcagccaaggacttggccaataagagctagaaacatcgcgacca |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21097549 |
atccaacactgcatttctgctactattgaaattagatctgccaacatcccaacttagcagccaaggacttggccaataagagctagaaacatcgcgaccg |
21097450 |
T |
|
| Q |
415 |
tcgtaatgaagaccgagaatgttttc |
440 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
21097449 |
tcgtaatgaagaccgagaatgttttc |
21097424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 15 - 433
Target Start/End: Complemental strand, 21107468 - 21107050
Alignment:
| Q |
15 |
cataggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattttcttccaatcttaggactataactacatgta |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||| || | || |||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
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|
| T |
21107468 |
cataggctcacaaccataagaccaatcactatggttcttcactctataccctggaatacaagaacattttcttccatgcttaggattataactacatgtg |
21107369 |
T |
|
| Q |
115 |
ctattagctccacaaattccatgaactaaacaagtacctgtaaaggcttgccatgaaacataccaattctgtgacacattagttctgctatacactctca |
214 |
Q |
| |
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|||||| |||||||||| |||||| ||| |||| ||| || |||||||||||||||||||||||| |||||||||||| |||| |||||||| || | |
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| T |
21107368 |
ctattatctccacaaatcccatgagctatgcaagcaccataaatggcttgccatgaaacataccaattttgtgacacattaattctactatacaccctta |
21107269 |
T |
|
| Q |
215 |
caacaccatcagaatccaatttcatcattctttgcataacagttccataatcagaagttgaaaaagtgaaattatctgatgaatggaaactaccaaaaga |
314 |
Q |
| |
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| |||||||||||||| |||||| ||||||| | ||| |||||||||||||| ||| ||| | |||||||| |||||| |||||||||||||||| |
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| T |
21107268 |
aattaccatcagaatccattttcattcttctttgtagaactgttccataatcagatgttatgaaaatcaaattatccgatgaaaggaaactaccaaaaga |
21107169 |
T |
|
| Q |
315 |
atccaacactgcatttctgctactattgaaattagatctgccaacatcccaacttagcagccaaggacttggccaataagagctagaaacatcgcgacca |
414 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||||| |||||||| | | || |||| |||||||| ||||||||||||||||||||| ||| | ||| |
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| T |
21107168 |
gtccaacaatgcaattctgctaccattgaaattagccctgccaacttgcgaaattagaagccaaggttttggccaataagagctagaaatatcagggcca |
21107069 |
T |
|
| Q |
415 |
tcgtaatgaagaccgagaa |
433 |
Q |
| |
|
|| ||||||||||| |||| |
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|
| T |
21107068 |
tcataatgaagaccaagaa |
21107050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 21112405 - 21112471
Alignment:
| Q |
17 |
taggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattt |
83 |
Q |
| |
|
|||||||||| |||||||||||||||||| | || |||||| ||||||| || | |||||||||||| |
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|
| T |
21112405 |
taggttcacatccataagaccaatcattatggttcttcattttataccccggcaaacaagagcattt |
21112471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 371
Target Start/End: Original strand, 21124024 - 21124153
Alignment:
| Q |
242 |
ttctttgcataacagttccataatcagaagttgaaaaagtgaaattatctgatgaatggaaactaccaaaagaatccaacactgcatttctgctactatt |
341 |
Q |
| |
|
||||||||||||| | ||||||||| |||| ||||||||| ||||||| ||||| ||| | |||| ||||||||||| ||| || || ||||||| |
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| T |
21124024 |
ttctttgcataaccataccataatcataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaaagcaattatggtactatt |
21124123 |
T |
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| Q |
342 |
gaaattagatctgccaacatcccaacttag |
371 |
Q |
| |
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| |||| ||||| ||||| | ||||||||| |
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| T |
21124124 |
gtaattggatcttccaacttgccaacttag |
21124153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 21131366 - 21131432
Alignment:
| Q |
18 |
aggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcatttt |
84 |
Q |
| |
|
||||||||||||||||||||||||| || | || |||| | |||| ||||| | ||||||||||||| |
|
|
| T |
21131366 |
aggttcacaaccataagaccaatcactatggttcttcactttatatcctggcaaacaagagcatttt |
21131432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 18659525 - 18659593
Alignment:
| Q |
15 |
cataggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattt |
83 |
Q |
| |
|
|||||||||||||||| |||| |||||||| | || |||| | |||||||||| | |||||||||||| |
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| T |
18659525 |
cataggttcacaaccagaagagaaatcattatggttcttcactttataccctggcaaacaagagcattt |
18659593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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