View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17902_high_1 (Length: 531)
Name: NF17902_high_1
Description: NF17902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17902_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 60 - 516
Target Start/End: Original strand, 10411026 - 10411482
Alignment:
| Q |
60 |
cgcatcaagagtcttgccatgtgtttgctatttccaattaaccaggtagaattctcaacaatagtcacaaattctgctttgacattagtcctaaactctt |
159 |
Q |
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| T |
10411026 |
cgcatcaagagtcttgccatgtgtttgctatttccaattaaccaggtagaattctcaacaatagtcacaaattctgctttgacattagtccaaaactctt |
10411125 |
T |
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| Q |
160 |
aaccaagagaataaaaggactaaacaacccttagcatagttattagaaaaagaaaaagtctataacaataactaacaactctataacatataatctaaga |
259 |
Q |
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| T |
10411126 |
aaccaagagaataaaaggagtaaacaacccttagcatagttattagaaaaagaaaaagtctataacaataactaataactctataacatataatctaaga |
10411225 |
T |
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| Q |
260 |
ctaattatgccagctaggaagcaaattgtttgaatagaagcatgcaaataaaaccaagcgggatcccgttgcttgaaataacggtaaattatggatccga |
359 |
Q |
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| T |
10411226 |
ctaattatgccagctaggaagtaaattgtttgaatagaagcatgcaaataaaaccaagcgggatcccgttgcttgaaataacgataaattatggatccga |
10411325 |
T |
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| Q |
360 |
gtatcatcagagtggtccatcctgcactctgcagaatgccatgccttcttcttcgaacttttgggttacaatttctcttaattattttacctgtttcaag |
459 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10411326 |
gtatcattagagtggtccatcctgcactctgcagaatgccatgccttcttcttggaacttttgggttacaatttctcttaattattttacctgtttcaag |
10411425 |
T |
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| Q |
460 |
aaataatattcagattgcagtcattttaacaaaacactaattaactgtgaagacaat |
516 |
Q |
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| T |
10411426 |
atataatattcagattgcagtcattttaacaaaacactaattaactgtgaagacaat |
10411482 |
T |
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