View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17902_high_8 (Length: 298)
Name: NF17902_high_8
Description: NF17902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17902_high_8 |
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| [»] chr4 (6 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 298
Target Start/End: Original strand, 30719241 - 30719518
Alignment:
| Q |
21 |
aaaaggaaaacatagagaaaaaggagtgttaacaacaagatttactcttgattccttaattgtattaatagatacacaagtatatacataaatcgcaaat |
120 |
Q |
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| T |
30719241 |
aaaaggaaaacgtagagaaaaaggagtgttaacaacaagatttactcttgattccttaattgtattaatagatacacaagtatatacataaatcgcaaat |
30719340 |
T |
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| Q |
121 |
cacattctatgtagctgctaaatgcaagaacaaccacattaatttagcataatttacaaagtttaggtaacatacgcattaagtttggaagttaagcagt |
220 |
Q |
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| T |
30719341 |
cacattctatgtagctgctaaatggaagaacaaccacattaatttagcataatttacatagtttaggtaacatacgcattaagtttggaagttaagcagt |
30719440 |
T |
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| Q |
221 |
agggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttc |
298 |
Q |
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| T |
30719441 |
agggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactcccctttgcatcttaatgtatccttc |
30719518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 30881965 - 30881841
Alignment:
| Q |
174 |
ttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgc |
273 |
Q |
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| T |
30881965 |
ttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactc |
30881866 |
T |
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| Q |
274 |
ccctttgcatcctaatgtatccttc |
298 |
Q |
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| T |
30881865 |
ccctttgcatcttaatgtatccttc |
30881841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 174 - 298
Target Start/End: Original strand, 44730830 - 44730954
Alignment:
| Q |
174 |
ttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgc |
273 |
Q |
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|||||||||||||||||| || | |||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| || | |
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| T |
44730830 |
ttacaaagtttaggtaacttaagtattaagtttgagaattaagcagtagggtaagatgcttgcattgcaatgccacagagtccttcagcggcatccactc |
44730929 |
T |
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| Q |
274 |
ccctttgcatcctaatgtatccttc |
298 |
Q |
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| T |
44730930 |
ccctttgcatcctaatgtatccttc |
44730954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 298
Target Start/End: Original strand, 16867217 - 16867341
Alignment:
| Q |
174 |
ttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgc |
273 |
Q |
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| T |
16867217 |
ttacaaagtttagataacataagtattaattttgacatttaagcagtagggtatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaacac |
16867316 |
T |
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| Q |
274 |
ccctttgcatcctaatgtatccttc |
298 |
Q |
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| T |
16867317 |
ctctttgcatcataatgtatccttc |
16867341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 30893062 - 30892924
Alignment:
| Q |
160 |
taatttagcataatttacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttc |
259 |
Q |
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||||||||||||||||||| ||||| || || ||| | || ||||||| | ||||||| || |||||||| ||||||||||||||||||||||| |
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| T |
30893062 |
taatttagcataatttacatagtttggggaatataagtatcaagtttgtctttcaagcagtgggataagatgccatcattgcaatgccacaaagtccttg |
30892963 |
T |
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| Q |
260 |
ggctgcatctacgcccctttgcatcctaatgtatccttc |
298 |
Q |
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| T |
30892962 |
agcagcatctacgctcctttgcatcctaatgtatccttc |
30892924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 30893144 - 30893080
Alignment:
| Q |
36 |
agaaaaaggagtgttaacaacaagatttactcttgattccttaattgtattaatagatacacaag |
100 |
Q |
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|||||||| || |||||||||| ||||||| || |||||||||||||||||||| ||||||||| |
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| T |
30893144 |
agaaaaagaagagttaacaacagtatttacttttcattccttaattgtattaataaatacacaag |
30893080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 298
Target Start/End: Complemental strand, 8899579 - 8899456
Alignment:
| Q |
175 |
tacaaagtttaggtaacatacgcattaagtttggaagttaagcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgcc |
274 |
Q |
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|||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||| | ||||||||||||||| || ||||| || || || || || |
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| T |
8899579 |
tacaaagtttaggtaacataagtattaagtttggcatttaagcagtagggtaagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcc |
8899480 |
T |
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| Q |
275 |
cctttgcatcctaatgtatccttc |
298 |
Q |
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|||||||||| ||||||| ||||| |
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| T |
8899479 |
cctttgcatcataatgtaaccttc |
8899456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 298
Target Start/End: Complemental strand, 31727696 - 31727614
Alignment:
| Q |
216 |
gcagtagggtaagatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttc |
298 |
Q |
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| T |
31727696 |
gcagttggataagatggttgcattgcaatgccacatagtccttctgaagcatccacacccctttgcatcctaatgtacccttc |
31727614 |
T |
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