View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17902_low_14 (Length: 263)
Name: NF17902_low_14
Description: NF17902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17902_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 35746427 - 35746585
Alignment:
| Q |
15 |
tcttcatcatgaaaggtaactcatgcacaagggttggctcatttctaaaaataagagattatgttaaacccaaacagcttatatatttatggctttatat |
114 |
Q |
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| T |
35746427 |
tcttcatcatgaaaggtaactcatgcacaagggttggctcatttctaaaaataagagattatgttaaacccaaacagcttatatatttatggctttatat |
35746526 |
T |
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| Q |
115 |
ttattctatatttaaggaacttttctctttgaatctaacaaactcataggcattttctt |
173 |
Q |
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| T |
35746527 |
ttattctatatttaaggaacttttctctttgaatctaacaaactcatgggcattttctt |
35746585 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 35746587 - 35746639
Alignment:
| Q |
197 |
gtatccctagatgctgttttcagaatttggtgaaagagttatttattgtgtat |
249 |
Q |
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| T |
35746587 |
gtatccctagatgttgttttcagaatttggtgaaagagttatttattgtgtat |
35746639 |
T |
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