View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17902_low_4 (Length: 481)
Name: NF17902_low_4
Description: NF17902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17902_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 15 - 464
Target Start/End: Complemental strand, 4143427 - 4142973
Alignment:
| Q |
15 |
tatacatatgactagaggaaaattaaatatatgtcatgttccatat-----ttgatctaatgattagtataatatttcaggaccaatgtactataaagga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143427 |
tatacatatgactagaggaaaattaaatatatgtcatgttccatatgaaatttgatctaatgattagtataatatttcaggaccaatgtactataaagga |
4143328 |
T |
|
| Q |
110 |
ttttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaatatccaaagatctcataaattgga |
209 |
Q |
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| T |
4143327 |
ttttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaatatccaaagatctcataaattgga |
4143228 |
T |
|
| Q |
210 |
ctcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttctcaggctcagccacaatagtccctggagaacaacctgttatatatat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143227 |
ctcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttctcaggctcagccacaatagtccctggagaacaacctgttatatatat |
4143128 |
T |
|
| Q |
310 |
gttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgccgaaggatctatcagaccctaagttaatagaatggataaaacac |
409 |
Q |
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| T |
4143127 |
gttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgccgaaggatctatcagaccctaagttaatagaatggataaaacac |
4143028 |
T |
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| Q |
410 |
cctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagtttagag |
464 |
Q |
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| T |
4143027 |
cctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagtttagag |
4142973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 87 - 456
Target Start/End: Complemental strand, 4138604 - 4138241
Alignment:
| Q |
87 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaat |
186 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||| |||||| | |||||||||||||||||||| || |
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| T |
4138604 |
caggaccaatgtactataaaggtgtttaccatttattctaccaatataaccctgatgcagcaacatttggtcatgagaaaatggtatggggtcattctat |
4138505 |
T |
|
| Q |
187 |
atccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtga---aacaagttgcttctcaggctcagccacaatagtc |
283 |
Q |
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||| || ||||||||||||||||||||| | ||| ||||||||| ||||||| ||||||| || ||||| | ||||| |||||||| ||| || |
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| T |
4138504 |
atcaaatgatctcataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgttggtcaggttcagccactatactc |
4138405 |
T |
|
| Q |
284 |
cctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgccgaaggatctatcagacc |
383 |
Q |
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|| || ||| |||||| ||||||||||||||| ||| || |||| | ||||||||||||| | ||||| ||||| ||| |||| || || | |
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| T |
4138404 |
ccaggtgaaaaacctg------ctatgttgtatacagg---aattgatcaaaatagacaccaagttcaaaatttagccatgccaaagaatctgtctgatc |
4138314 |
T |
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| Q |
384 |
ctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagttgaagtaggtga |
456 |
Q |
| |
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|| | |||| |||||| |||||| |||||||||||||||||| || |||||| |||||||||||| ||||| |
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| T |
4138313 |
cttacttaagggaatgggaaaaacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtga |
4138241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 456
Target Start/End: Complemental strand, 4129811 - 4129525
Alignment:
| Q |
164 |
aaaatggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtga---aacaagttgct |
260 |
Q |
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|||||||||||||||||||| ||||| || ||||||||||||||||||||| | ||| ||||||||| ||||||| ||||||| || ||||| | |
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| T |
4129811 |
aaaatggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgtt |
4129712 |
T |
|
| Q |
261 |
tctcaggctcagccacaatagtccctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagc |
360 |
Q |
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||||| |||||||| ||| |||| || ||| |||||| ||||||||||||||| ||| || |||| | ||||||||||||| | ||||| |
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| T |
4129711 |
ggtcaggttcagccactatactcccaggtgaaaaacctg------ctatgttgtatacagg---aattgatcaaaatagacaccaagttcaaaatttagc |
4129621 |
T |
|
| Q |
361 |
tatgccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagttgaagtaggtga |
456 |
Q |
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||||| ||| |||| || || ||| | |||| |||||| |||||| |||||||||||||||||| || |||||| |||||||||||| ||||| |
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| T |
4129620 |
catgccaaagaatctgtctgatccttacttaagggaatgggaaaaacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtga |
4129525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 4130450 - 4130402
Alignment:
| Q |
87 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataa |
135 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||||||||| |||| |
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| T |
4130450 |
caggaccaatgtactataaaggagtttaccatttattctaccaatataa |
4130402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 4118444 - 4118340
Alignment:
| Q |
345 |
aagttcaatacttagctatgccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagt |
444 |
Q |
| |
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||||||| |||||||||| || ||| ||||| ||||| || |||| |||||| ||||||||||||||||||| ||||| || |||||| |||||| |
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| T |
4118444 |
aagttcagaacttagctataccaaagaatctaacagacgctttcttaagggaatgggaaaaacaccctcaaaatcctgtgatgactccacctactggagt |
4118345 |
T |
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| Q |
445 |
tgaag |
449 |
Q |
| |
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||||| |
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| T |
4118344 |
tgaag |
4118340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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