View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17902_low_6 (Length: 405)
Name: NF17902_low_6
Description: NF17902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17902_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 2104672 - 2105085
Alignment:
| Q |
8 |
acacaacaacatcaagtttcaaaattctgtcaa-------caagtttcaaaatgaatagtacattggtgacataggatagccattattactgccatgctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2104672 |
acacaacaacatcaagtttcaaaattctgtcaaaaaacaccaagtttcaaaatgaatagtacattggtgacataggatagccattattactgccatgctc |
2104771 |
T |
|
| Q |
101 |
tttattacatttaccttggttagtttttattactgtccatagttgttgtcgtaaagaatttattctggttaataaaaaatttgaaatccggtttcagaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2104772 |
tttattacatttaccttggttagtttttattactgtccatagttgttgtagtaaagaatttattctggttaataaaaaatttgaaatccggtttcagaat |
2104871 |
T |
|
| Q |
201 |
ttgttataacaaaccgatcaattttactatatagtatagtactgtggactctaacaaacacattagagctggaattggagtt---------------gag |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
2104872 |
ttgttataacaaaccgatcaattttactatatagtatagtactgtggactctaacaaacacattagacctggaattggagttgaaaaatcatagagagag |
2104971 |
T |
|
| Q |
286 |
aaatcacgagcagtggaaaaagagaggtaaatt---ttcttctttatatattcttctgctattttttacggaacaatgtgactatgacaatacttgatga |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2104972 |
aaatcacgagcagtggaaaaagagaggtaaattttcttcttctttatatattcttctgctattttttacggaacaatgtgactatgacaatacttgatga |
2105071 |
T |
|
| Q |
383 |
tacgtttttagcat |
396 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2105072 |
tacgtttttagcat |
2105085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 151 - 291
Target Start/End: Original strand, 2096001 - 2096147
Alignment:
| Q |
151 |
gtaaagaatttattctggttaataaaaaatttgaaatccggtttcagaatttgttataacaaaccgatcaattttacta--tatagta----tagtactg |
244 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || || ||||| |
|
|
| T |
2096001 |
gtaaagaatttactctggttaataaaaaatttgaaatccggtttcagaatttgttataacaaaccgatcagttttactatttatactactactactactg |
2096100 |
T |
|
| Q |
245 |
tggactctaacaaacacattagagctggaattggagttgagaaatca |
291 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| |||||| |
|
|
| T |
2096101 |
cggactctaacaaacacattagagctagacttggagttgaaaaatca |
2096147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 2085845 - 2085947
Alignment:
| Q |
41 |
caagtttcaaaatgaatagtacattggtgacataggatagccattattactgccatgctctttattacatttaccttggttagtttttattactgtccat |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
2085845 |
caagtttcaaaatgaatagtacattggtgacataggattgctattatttctgccatgctcattattacatttaccatggttggtttttattactgtccat |
2085944 |
T |
|
| Q |
141 |
agt |
143 |
Q |
| |
|
||| |
|
|
| T |
2085945 |
agt |
2085947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 2052765 - 2052826
Alignment:
| Q |
164 |
tctggttaataaaaaatttgaaatccggtttcagaatttgttataacaaaccgatcaatttt |
225 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2052765 |
tctggttcataaattatttgaaatccggtttcagaatttgttataacaaaccgatcagtttt |
2052826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University