View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17902_low_8 (Length: 342)
Name: NF17902_low_8
Description: NF17902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17902_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 9219721 - 9220036
Alignment:
| Q |
18 |
aaaatgtgaatcagaaaaccctctaatgaagaagcaataactgaatcagaaacgtgatatcagaattgtgaaattcaatcgatgaaatttaggtatattg |
117 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9219721 |
aaaacgtgaatcagaaaaccctctgatgaagaagcaataactgaatcaaaaacgtgatatcagaattgtgaaattcaatcgatgaaatttaggtatattg |
9219820 |
T |
|
| Q |
118 |
agaattcagaattgaagaaaaaattaccggaaattgagatcttggttttatggtttgttgaattgaaggaagaaaagggttagagagctgacattgagaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9219821 |
agaattcagaattgaagaaaaaattaccggaaattgagatcttggttttatggtttgttgaattgaaggaagaaaagggttagagagctgacattgagaa |
9219920 |
T |
|
| Q |
218 |
ttttgcaggaaactgtgaaaataatgtttggagagagtggaatgaaggagatgttgcggaatgtgtgttcgaatgaaactgaaaattgaaagtagttacg |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| | || |||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
9219921 |
ttttgcaggaaactgtgaaaataatatttggagagagtggaatgaaggagaggctgtggaatgtgtgttcgaatggaactgaaaattgaaagcagttacg |
9220020 |
T |
|
| Q |
318 |
gaagtgatgatgatgt |
333 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9220021 |
gaagtgatgatgatgt |
9220036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 125 - 264
Target Start/End: Original strand, 3848101 - 3848236
Alignment:
| Q |
125 |
agaattgaagaaaaaattacc-ggaaattgagatcttggttttatggtttgttgaattgaaggaagaaaagggttagagagctgacattgagaattttgc |
223 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| |||||||| |||||| |||||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
3848101 |
agaattgaagaaaaaattaccaggaatttgagataatggttttagggtttgatgaattgaaggaaggtaggggttagagag-----attgagaattttgc |
3848195 |
T |
|
| Q |
224 |
aggaaactgtgaaaataatgtttggagagagtggaatgaag |
264 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||| |||| |
|
|
| T |
3848196 |
aggaaactgtaaagagaatatttggagagagtggaaagaag |
3848236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University