View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17902_low_9 (Length: 310)
Name: NF17902_low_9
Description: NF17902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17902_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 29222975 - 29223250
Alignment:
| Q |
17 |
aatatggcttcaatcagtggtggagttagaaataattttcagggtgggccaatttgtgctttgttcatatatactattaatagcaagattgnnnnnnnn- |
115 |
Q |
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| T |
29222975 |
aatatggcttcaatcagtggcggagatagaaataattttcggggtgggtcaatttgtgctttgttcatacata-tattaatagcaagattgaaaaaaaaa |
29223073 |
T |
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| Q |
116 |
--ggttgttacctttaatggtaaagaattattaaagtgtagcagtatgcacggttcgaaccttcatggtcnnnnnnnnnnnnnnnnnaaaaataatctaa |
213 |
Q |
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| T |
29223074 |
aaggttgttacctttaatggtaaagaattattaaagtgttgcagtatgcgcggtacgaaccttcatggtctttttaatttatttttaaaaaa-aatcgaa |
29223172 |
T |
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| Q |
214 |
agaaattaaaaagagtgtcccaacagaagttgatcttaagacgtgcaaaacctttgccaaaccactggaacacgctgc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
29223173 |
agaaattaaaaagagtgtcccaacagaagttgatcttaagacgtgcaaaacctttgccaaaccgctgaaacacactgc |
29223250 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 25368446 - 25368407
Alignment:
| Q |
32 |
agtggtggagttagaaataattttcagggtgggccaattt |
71 |
Q |
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| T |
25368446 |
agtggtggagttagaaataattttcagggtgggctaattt |
25368407 |
T |
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