View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_1 (Length: 1533)
Name: NF17903_high_1
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 1085; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1085; E-Value: 0
Query Start/End: Original strand, 1 - 1116
Target Start/End: Original strand, 36941917 - 36943033
Alignment:
| Q |
1 |
atatattctttcaacgatttcttccctgtgagacgcaagggttctcaatactagtataaatatgttatgacacaaatcctcttcggtctctccatcacct |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941917 |
atatattcttgcaacgatttcttccctgtgagacgcaagggttctcaatactagtataaatatgttatgacacaaatcctcttcggtctctccatcacct |
36942016 |
T |
|
| Q |
101 |
ccagcagtatcttgatcgttggattaattcaacgaccgagctctgctggagaggtagaagaggccgcagaagattcattttgcaaaaccacttaccatat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942017 |
ccagcagtatcttgatcgttggattaattcaacgaccaagctctgctggagaggtagaagaggccgcagaagattcattttgcaaaaccacttaccatat |
36942116 |
T |
|
| Q |
201 |
agtcatgatttcctttattacaaaatgatgagctgttgctaactgaggcaagaccatcaaagaacaacttttgctgttcaaatggaaaattcccacatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942117 |
agtcatgatttcctttattacaaaatgatgagctgttgctaactgaggcaagaccatcaaagaacaacttttgctgttcaaatggaaaattcccacatga |
36942216 |
T |
|
| Q |
301 |
aaatttattcaagttttctgggaatctaaggtgttgattaccattcaattgagatttcaccaatgcttgcaaagtgttagacagttcaaagttggggtca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942217 |
aaatttattcaagttttctgggaatctaaggtgttgattaccattcaattgagatttcaccaatgcttgcaaagtgttagacagttcaaagttggggtca |
36942316 |
T |
|
| Q |
401 |
tgttggtttgatgcatccaataaatgattgttttccctaagagattgacacaaagggaattccaaatcattaaccttatatgattgagaactcaaagatt |
500 |
Q |
| |
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| T |
36942317 |
tgttggtttgatgcatccaataaatgattgttttccctaagagattgacacaaagggaattccaaatcattaaccttatatgattgagaactcaaagatt |
36942416 |
T |
|
| Q |
501 |
gattattatcaacttggtgatcaaactctgcaaatcccatgcagttttctgttgcataaaaagcagaagctggtgactcgaaacggctcataatagtgtt |
600 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942417 |
gattattatcaacttggtgatcaaattctgcaaatcccatgcagttttctgttgcataaaaagcagaagctggtgactcgaaacggctcataatagtgtt |
36942516 |
T |
|
| Q |
601 |
tgtattacatgattttgttgattctccttcttcaactatggataattgttgttgattgcatgctcctatattccaaatttgactcatatcaaaaaattga |
700 |
Q |
| |
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| T |
36942517 |
tgtattacatgattttgttgattctccttcttcaactatggataattgttgttgattgcatgctcctatattccaaatttgactcatatcaaaaaattga |
36942616 |
T |
|
| Q |
701 |
catgaactattgcaaaactcaaaattcaccaaaatttggacaaagattttgagttgtactaatagatatatggaaaatagttcattgaaaactgagaaca |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942617 |
catgaactattgcaaaactcaaaattcaccaaaatttggacaaagattttgagttgtactaatagatatatggaaaatagttcattgaaaactgagaaca |
36942716 |
T |
|
| Q |
801 |
aaatggaagagggaggtaa-aagaagattgaaatggtgatactaataatgctaatttgagactatatttagtatagatttgtctcatatattcccatata |
899 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942717 |
aaatggaagagggaggtaagaagaagattgaaagggtgatactaataatgctaatttgagactatatttagtatagatttgtctcatatattcccatata |
36942816 |
T |
|
| Q |
900 |
aaggcttcaagaataagatatgaatcaatatgtctaaatgaggtaatgcagggtcaacagcaaattattcttgaattaaagataagaatggacaataatc |
999 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36942817 |
aaggcttcaagaataagatatgaatcaatatttctaaatgaggtaatgcagggtcaacagcaaattattcttgaattaaagataagaatggacaataacc |
36942916 |
T |
|
| Q |
1000 |
aaattgacataaacaaagtactgttacatagaaacaaacaaaaaataattgtctaatgttgtcatcatgtgaaattgaaccaagtgaaaaagaatctgga |
1099 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942917 |
aaattgacataaacaaagtactgttacatagaaacaaacaaaaaataattgtctaatgttgtcatcatgtgaaattgaaccaagtgaaaaagaatctgga |
36943016 |
T |
|
| Q |
1100 |
gataaaaaatgaggaaa |
1116 |
Q |
| |
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||||||||||||||||| |
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| T |
36943017 |
gataaaaaatgaggaaa |
36943033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1183 - 1454
Target Start/End: Original strand, 36943100 - 36943371
Alignment:
| Q |
1183 |
aaaaataataatttattcaagggcaagctggcctataaaaactaaacttcaaaaggttaaaataataagtcagagggcaaaactacatactactaatgtt |
1282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36943100 |
aaaaataataatttattcaagggcaagctggcctataaaaactaaacttcaaaaggttaaaataataagtcagagggcacaactacatactactaatgtt |
36943199 |
T |
|
| Q |
1283 |
tttggcccttacatcaattatttaagattagggtcacactcaagagaggttaaaaagtatttccaggctattacgatgtatataaactaatattaatctc |
1382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
36943200 |
tttggcccttacatcaattatttaagattagggtcacactcaagagaggttaaaaagtatttccagactattacaatgtatataaactaatattaatctc |
36943299 |
T |
|
| Q |
1383 |
tcaattgtctgtcagcagagagcataaatactttaaagtaaagttggaaaacaaagacgatcttatcttaaa |
1454 |
Q |
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| T |
36943300 |
tcaattgtctgtcagcagagagcataaatactttaaagtaaagttggaaaacaaagacgatcttatcttaaa |
36943371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1473 - 1513
Target Start/End: Original strand, 36943390 - 36943431
Alignment:
| Q |
1473 |
aatgagaatcatgtacata-ttttttaacagtttctctaaca |
1513 |
Q |
| |
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| T |
36943390 |
aatgagaatcatgtacatatttttttaacagtttctctaaca |
36943431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 510 - 594
Target Start/End: Original strand, 22814972 - 22815056
Alignment:
| Q |
510 |
caacttggtgatcaaactctgcaaatcccatgcagttttctgttgcataaaaagcagaagctggtgactcgaaacggctcataat |
594 |
Q |
| |
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||||||||| |||| | | || ||| |||||||| ||||||||||||||||||| |||| ||||||||| |||| |||||||| |
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| T |
22814972 |
caacttggtaatcatattgtggaaaacccatgcaaatttctgttgcataaaaagctgaagttggtgactcaaaacttctcataat |
22815056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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