View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_high_16 (Length: 507)

Name: NF17903_high_16
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_high_16
NF17903_high_16
[»] chr3 (1 HSPs)
chr3 (158-344)||(35225018-35225205)
[»] chr4 (4 HSPs)
chr4 (382-491)||(3339496-3339605)
chr4 (11-100)||(926003-926092)
chr4 (11-99)||(46634381-46634469)
chr4 (158-250)||(32516685-32516778)
[»] chr2 (1 HSPs)
chr2 (160-260)||(29521092-29521193)
[»] chr6 (1 HSPs)
chr6 (219-259)||(9284375-9284415)
[»] chr8 (2 HSPs)
chr8 (15-66)||(10417678-10417729)
chr8 (15-66)||(17877698-17877749)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 158 - 344
Target Start/End: Original strand, 35225018 - 35225205
Alignment:
Q  158 aaacagccaatattattaacacaagctggcgtaagaagcaccgagcaaggtaagaggaaagcaattacaaggtaccgaatatatgcgaaacacctaacca 257  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||    
T  35225018 aaacagccaatattattaacacaagctggcataagaagcaccgagcaaggtaagaggaaagcaatttcaaggtgccgaatatatgctaaacaccaaacca 35225117  T
Q  258 aaatacattcggtatatat-ttgaacctaggcccacaagaaaaaaggcacc-aaaaaccactgctaacccaccaaaaacacaccagcag 344  Q
    |||||||||| ||||||||   |||||||  |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  35225118 aaatacattccgtatatatgcggaacctaaacccacaagaaaaaaggcaccaaaaaaccactgctaaccca-ctaaaacacaccagcag 35225205  T

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Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 382 - 491
Target Start/End: Original strand, 3339496 - 3339605
Alignment:
Q  382 taattaagaagctaaaatcagttgcatcgatcgatatatctaaggtaaactactagttgtaaattcattgaaaacatcaacccctgaatacgttcgaaac 481  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3339496 taattcagaagctaaaatcagttgcatcgatcgatatatctaaggtaagctactagttgtaaattcattgaaaacatcaacccctgaatacgttcgaaac 3339595  T
Q  482 atgttgttcc 491  Q
    ||||||||||    
T  3339596 atgttgttcc 3339605  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 926003 - 926092
Alignment:
Q  11 atgaattaaggataaaactgtaataacacatcaacaacaagttcattcgttgttttccgtataaaaagattatgtactatctagcatttt 100  Q
    ||||| |||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  926003 atgaactaaggataaaactgtaataacacatcaatagtaagttcattcgttgttttccgtataaaaagattccgtactatctagcatttt 926092  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 46634381 - 46634469
Alignment:
Q  11 atgaattaaggataaaactgtaataacacatcaacaacaagttcattcgttgttttccgtataaaaagattatgtactatctagcattt 99  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||||   |||||||||||||||    
T  46634381 atgaattaaggataaaattgtaataatacatcaacatcaagttcattcgttgttttccgtataaagagattccatactatctagcattt 46634469  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 32516685 - 32516778
Alignment:
Q  158 aaacagccaatattattaacacaagctggcgtaagaagcaccgagcaaggtaagaggaa-agcaattacaaggtaccgaatatatgcgaaacac 250  Q
    ||||||||||||||||||||| |||| |||||||||  ||||||||||||||| | |||   |||||||||||| ||||||||||| |||||||    
T  32516685 aaacagccaatattattaacataagccggcgtaagacacaccgagcaaggtaaaaagaagcacaattacaaggtgccgaatatatgggaaacac 32516778  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 29521092 - 29521193
Alignment:
Q  160 acagccaatattattaacacaagctggcgtaagaagcaccgagcaaggtaagaggaa-agcaattacaaggtaccgaatatatgcgaaacacctaaccaa 258  Q
    |||| ||||||||||| | ||||| || |||||| ||||| |||| ||||| | ||| | ||||||||||||  ||||||||||||||||||| ||||||    
T  29521092 acagtcaatattattacctcaagccggtgtaagacgcaccaagcagggtaaaaagaagaacaattacaaggtgtcgaatatatgcgaaacaccaaaccaa 29521191  T
Q  259 aa 260  Q
    ||    
T  29521192 aa 29521193  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 9284415 - 9284375
Alignment:
Q  219 caattacaaggtaccgaatatatgcgaaacacctaaccaaa 259  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  9284415 caattacaaggtgccgaatatatgcgaaacaccaaaccaaa 9284375  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 10417678 - 10417729
Alignment:
Q  15 attaaggataaaactgtaataacacatcaacaacaagttcattcgttgtttt 66  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||||    
T  10417678 attaaggataaaactgtaataacaaatacacatcaagttcaatcgttgtttt 10417729  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 17877698 - 17877749
Alignment:
Q  15 attaaggataaaactgtaataacacatcaacaacaagttcattcgttgtttt 66  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||||    
T  17877698 attaaggataaaactgtaataacaaatacacatcaagttcaatcgttgtttt 17877749  T

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