View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_high_18 (Length: 493)

Name: NF17903_high_18
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_high_18
NF17903_high_18
[»] chr6 (11 HSPs)
chr6 (4-263)||(9833265-9833524)
chr6 (353-493)||(9832913-9833051)
chr6 (263-360)||(9833082-9833180)
chr6 (291-335)||(2455838-2455882)
chr6 (291-358)||(2460124-2460193)
chr6 (291-336)||(27909635-27909680)
chr6 (293-330)||(31583709-31583746)
chr6 (291-335)||(8420195-8420239)
chr6 (289-358)||(9027604-9027675)
chr6 (291-335)||(9667983-9668027)
chr6 (291-335)||(34939772-34939816)
[»] chr7 (2 HSPs)
chr7 (7-65)||(33469064-33469122)
chr7 (284-335)||(27626121-27626172)
[»] chr4 (7 HSPs)
chr4 (291-335)||(6987739-6987783)
chr4 (288-358)||(27725239-27725311)
chr4 (291-335)||(11264329-11264373)
chr4 (291-335)||(24929521-24929565)
chr4 (277-324)||(28406926-28406973)
chr4 (291-358)||(27123325-27123394)
chr4 (287-336)||(43412385-43412434)
[»] chr1 (6 HSPs)
chr1 (291-335)||(35017604-35017648)
chr1 (291-330)||(43333709-43333748)
chr1 (284-330)||(30259489-30259535)
chr1 (296-329)||(35669005-35669038)
chr1 (293-334)||(39347966-39348007)
chr1 (298-330)||(17420238-17420270)
[»] chr5 (5 HSPs)
chr5 (295-329)||(42582528-42582562)
chr5 (276-335)||(18875374-18875433)
chr5 (291-335)||(19138715-19138759)
chr5 (287-335)||(35963265-35963313)
chr5 (291-335)||(41052896-41052940)
[»] chr8 (2 HSPs)
chr8 (291-334)||(6875266-6875309)
chr8 (286-315)||(7039833-7039862)
[»] chr3 (5 HSPs)
chr3 (291-330)||(43397855-43397894)
chr3 (295-358)||(37273166-37273231)
chr3 (293-330)||(29771868-29771905)
chr3 (290-335)||(49465934-49465979)
chr3 (291-335)||(43115084-43115128)
[»] chr2 (6 HSPs)
chr2 (284-360)||(1742003-1742081)
chr2 (291-335)||(1939330-1939374)
chr2 (291-335)||(16947054-16947098)
chr2 (291-335)||(17017719-17017763)
chr2 (291-335)||(34652034-34652078)
chr2 (291-335)||(43065448-43065492)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 263
Target Start/End: Complemental strand, 9833524 - 9833265
Alignment:
Q  4 acctgtgaggatcttgtatgcctcagcgggaatgtcggcaaagtaggtctcgacaagaacatttaaaccagataaagaggaagcaagatctgagtatgct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833524 acctgtgaggatcttgtatgcctcagcgggaatgtcggcaaagtaggtctcaacaagaacatttaaaccagataaagaggaagcaagatctgagtatgct 9833425  T
Q  104 gcagtaaatgcgttcaacttgggtgattcaaggtctaagacaagtgaaggttcatcaaattgaatccatgaagccccggctgccttaagatcagccacaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833424 gcagtaaatgcgttcaacttgggtgattcaaggtctaagacaagtgaaggttcatcaaattgaatccatgaagccccggctgccttaagatcagccacaa 9833325  T
Q  204 cttccctgagttaataaaaataagcgatttaggaaagtaacatggataaacaacttaatt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833324 cttccctgagttaataaaaataagcgatttaggaaagtaacatggataaacaacttaatt 9833265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 353 - 493
Target Start/End: Complemental strand, 9833051 - 9832913
Alignment:
Q  353 ctcaaataagacatccaaataggcctataaacacataaagcgcaaactattaaccgttctccacaacttagattcttacttgtatactgcaatgactttt 452  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833051 ctcaaataagacatccaaataggcctataaaca--taaagcgcaaactattaaccgttctccacaacttagattcttacttgtatactgcaatgactttt 9832954  T
Q  453 gggaggagagtaagaagatcaaaggatggatcaacaccgtt 493  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9832953 gggaggagagtaagaagatcaaaggatggatcaacaccgtt 9832913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 9833180 - 9833082
Alignment:
Q  263 ttttcttataagcaataagaaatcatgaagagcttatggaaataagttgaaaataatttatggacatgccatat-tttttccataagatctctcaaata 360  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9833180 ttttcttataagcaataagctatcatgaagagcttatggaaataagttgaaaataatttatggacatgccatatgtttttccataagatctctcaaata 9833082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 2455838 - 2455882
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||    
T  2455838 agagcttatggaaataagttgaaaatagtttatgggcatgtcata 2455882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 2460193 - 2460124
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 358  Q
    ||||||||||||||||||||||||| || |||  |||||| ||||  || |||||||||| |||||||||    
T  2460193 agagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaa 2460124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 27909680 - 27909635
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccatat 336  Q
    |||||||||||||||||| |||||| || ||||||||||| |||||    
T  27909680 agagcttatggaaataagctgaaaacaacttatggacatgtcatat 27909635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 31583709 - 31583746
Alignment:
Q  293 agcttatggaaataagttgaaaataatttatggacatg 330  Q
    ||||||||||||||||||||||| || |||||||||||    
T  31583709 agcttatggaaataagttgaaaacaacttatggacatg 31583746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 8420239 - 8420195
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    |||||||||||||||||||||||||||  || |||||||| ||||    
T  8420239 agagcttatggaaataagttgaaaatagcttgtggacatgtcata 8420195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 9027604 - 9027675
Alignment:
Q  289 gaagagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 358  Q
    |||||||||||| ||||||| |||||| || ||||||||||| ||||  || |||||||||| ||| |||||    
T  9027604 gaagagcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctctttcaaa 9027675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 9668027 - 9667983
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||||||||||||||||||||||| |  ||||||||||| ||||    
T  9668027 agagcttatggaaataagttgaaaacagcttatggacatgtcata 9667983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 34939772 - 34939816
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    |||| ||||||||||||| |||||| |||||||||||||| ||||    
T  34939772 agagtttatggaaataagctgaaaacaatttatggacatgtcata 34939816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 33469064 - 33469122
Alignment:
Q  7 tgtgaggatcttgtatgcctcagcgggaatgtcggcaaagtaggtctcgacaagaacat 65  Q
    ||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||    
T  33469064 tgtgagggtcttgtatgcctcagcgggaatatcagcaaagtaggtctcaacaagaacat 33469122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 27626172 - 27626121
Alignment:
Q  284 atcatgaagagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||| ||||    
T  27626172 atcatgaagagcttatggaaataagtttaaaacagtttatggacatgtcata 27626121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 6987783 - 6987739
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
T  6987783 agagcttatggaaataagttgaaaatagtttatggacatgtcata 6987739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 27725239 - 27725311
Alignment:
Q  288 tgaagagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 358  Q
    ||||| |||||||||||| | ||||||||| |||||||||||| ||||  || |||||||||| |||||||||    
T  27725239 tgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaa 27725311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 11264329 - 11264373
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||    
T  11264329 agagcttatggaaataagttgaaaacagtttatggacatgtcata 11264373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 24929521 - 24929565
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||    
T  24929521 agagcttatggaaataagctgaaaacaatttatgaacatgccata 24929565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 28406926 - 28406973
Alignment:
Q  277 ataagaaatcatgaagagcttatggaaataagttgaaaataatttatg 324  Q
    ||||||||||| |||||||||||||||||||| || ||||| ||||||    
T  28406926 ataagaaatcaggaagagcttatggaaataagctgcaaatagtttatg 28406973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 27123394 - 27123325
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 358  Q
    ||||||||||||||||||||||||| || |||  |||||| ||||  || |||||||||| |||||||||    
T  27123394 agagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaa 27123325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 43412385 - 43412434
Alignment:
Q  287 atgaagagcttatggaaataagttgaaaataatttatggacatgccatat 336  Q
    |||||||||||||| ||||||| || ||| |||||||||||||| |||||    
T  43412385 atgaagagcttatgcaaataagatggaaacaatttatggacatgtcatat 43412434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 35017604 - 35017648
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  35017604 agagcttatggaaataagttgaaaataacttatggacatgtcata 35017648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 43333709 - 43333748
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatg 330  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  43333709 agagcttatggaaataagatgaaaataatttatggacatg 43333748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 30259535 - 30259489
Alignment:
Q  284 atcatgaagagcttatggaaataagttgaaaataatttatggacatg 330  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  30259535 atcatggagagcttatggaaataagttgaaaacaatttattgacatg 30259489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 35669005 - 35669038
Alignment:
Q  296 ttatggaaataagttgaaaataatttatggacat 329  Q
    |||||||||||||||||||| |||||||||||||    
T  35669005 ttatggaaataagttgaaaacaatttatggacat 35669038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 39348007 - 39347966
Alignment:
Q  293 agcttatggaaataagttgaaaataatttatggacatgccat 334  Q
    |||||||||||||||| |||||| || |||||||||||||||    
T  39348007 agcttatggaaataagctgaaaacaacttatggacatgccat 39347966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 17420238 - 17420270
Alignment:
Q  298 atggaaataagttgaaaataatttatggacatg 330  Q
    |||||||||||||||||| ||||||||||||||    
T  17420238 atggaaataagttgaaaacaatttatggacatg 17420270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 42582528 - 42582562
Alignment:
Q  295 cttatggaaataagttgaaaataatttatggacat 329  Q
    |||||||||||||||||||||||||||||||||||    
T  42582528 cttatggaaataagttgaaaataatttatggacat 42582562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 18875374 - 18875433
Alignment:
Q  276 aataagaaatcatgaagagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||||| ||| || |||||||||||||| |||||||||| || |||||| |||||||||    
T  18875374 aataagatatcctggagagcttatggaaacaagttgaaaacaacttatgggcatgccata 18875433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 19138759 - 19138715
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    |||||||||||||||||| |||||| |||||||| ||||| ||||    
T  19138759 agagcttatggaaataagctgaaaacaatttatgtacatgtcata 19138715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 35963265 - 35963313
Alignment:
Q  287 atgaagagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||| |||||||||||||||| |||||| || ||||||||||| ||||    
T  35963265 atgaaaagcttatggaaataagctgaaaacaacttatggacatgtcata 35963313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 41052896 - 41052940
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    |||||||||||||||||||| |||||| |||||| ||||| ||||    
T  41052896 agagcttatggaaataagttaaaaatagtttatgaacatgtcata 41052940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 6875309 - 6875266
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccat 334  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||    
T  6875309 agagcttaaggaaataagttgaaaaaaatttatgggcatgccat 6875266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 7039833 - 7039862
Alignment:
Q  286 catgaagagcttatggaaataagttgaaaa 315  Q
    ||||||||||||||||||||||||||||||    
T  7039833 catgaagagcttatggaaataagttgaaaa 7039862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 43397855 - 43397894
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatg 330  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  43397855 agagcttatggaagtaagttgaaaacaatttatggacatg 43397894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 37273166 - 37273231
Alignment:
Q  295 cttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 358  Q
    ||||||||||||||||||||| || ||||||||||| ||||  || |||||||||| |||| ||||    
T  37273166 cttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaa 37273231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 29771868 - 29771905
Alignment:
Q  293 agcttatggaaataagttgaaaataatttatggacatg 330  Q
    ||||||||||||||||||||||| || |||||||||||    
T  29771868 agcttatggaaataagttgaaaacaacttatggacatg 29771905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 49465979 - 49465934
Alignment:
Q  290 aagagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||| |||||||||||||||||||||| || ||||||||| ||||    
T  49465979 aagagtttatggaaataagttgaaaatagttcatggacatgtcata 49465934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 43115084 - 43115128
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    |||||||||||||||||| |||||| || ||||||||||| ||||    
T  43115084 agagcttatggaaataagctgaaaacaagttatggacatgtcata 43115128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 1742081 - 1742003
Alignment:
Q  284 atcatgaagagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaata 360  Q
    ||||||||||| |||||||||||||||||| |||  ||||| ||||| ||||  || |||||||||| |||| ||||||    
T  1742081 atcatgaagagtttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataagctctcccaaata 1742003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 1939374 - 1939330
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||||||||||||||||||||||| |  ||||||||||| ||||    
T  1939374 agagcttatggaaataagttgaaaacagcttatggacatgtcata 1939330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 16947054 - 16947098
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    |||||| || |||||||||||||||||||||||| ||||| ||||    
T  16947054 agagctcatagaaataagttgaaaataatttatgaacatgtcata 16947098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 17017719 - 17017763
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    |||||| || |||||||||||||||||||||||| ||||| ||||    
T  17017719 agagctcatagaaataagttgaaaataatttatgaacatgtcata 17017763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 34652078 - 34652034
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||||||||||||||||||||||| |  ||||||||||| ||||    
T  34652078 agagcttatggaaataagttgaaaacagcttatggacatgtcata 34652034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 43065492 - 43065448
Alignment:
Q  291 agagcttatggaaataagttgaaaataatttatggacatgccata 335  Q
    ||||||||| |||||||| |||||| |||||||||||||| ||||    
T  43065492 agagcttattgaaataagctgaaaacaatttatggacatgtcata 43065448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University