View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_27 (Length: 430)
Name: NF17903_high_27
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 2841263 - 2841153
Alignment:
| Q |
308 |
ttttgttgaaatttgtggatttgacaaaccaccgtaatatgtgatacatgcacttgcactatatcatataactccagcacaatagccttcaatcaccaaa |
407 |
Q |
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| T |
2841263 |
ttttgtttaaatttgtgtttttgacaaaccaccgtaatatgtgatacatgcactagcactatatcagataactccaacacaataaccttcaatcaccata |
2841164 |
T |
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| Q |
408 |
tgccacaggtt |
418 |
Q |
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||| ||||||| |
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| T |
2841163 |
tgcaacaggtt |
2841153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 26150763 - 26150812
Alignment:
| Q |
24 |
aaaaaattgggtaataatctggtgtgactatagccacactcagccatacg |
73 |
Q |
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| T |
26150763 |
aaaaaattgggtaataatctggtgtggctatagccatactcagccatacg |
26150812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 12150787 - 12150731
Alignment:
| Q |
24 |
aaaaaattgggtaataatctggtgtgactatagccacactcagccatacggtgggtc |
80 |
Q |
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| T |
12150787 |
aaaaagttaggtgataatctggtgtgactatagccacactcaaccatacggtgggtc |
12150731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 50390029 - 50389973
Alignment:
| Q |
24 |
aaaaaattgggtaataatctggtgtgactatagccacactcagccatacggtgggtc |
80 |
Q |
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| T |
50390029 |
aaaaaaatgagtaataatcaggtgcggctatagccacactcagccatacggtgggtc |
50389973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 37422609 - 37422558
Alignment:
| Q |
22 |
agaaaaaattgggtaataatctggtgtgactatagccacactcagccatacg |
73 |
Q |
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| T |
37422609 |
agaaaaaattggctaataatctggtgtatctatagccacatttagccatacg |
37422558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 13203852 - 13203913
Alignment:
| Q |
19 |
aagagaaaaaattgggtaataatctggtgtgactatagccacactcagccatacggtgggtc |
80 |
Q |
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| T |
13203852 |
aagataaaaaattggataataatctggtgtggcgataaccacactcagtcatacagtgggtc |
13203913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 14341690 - 14341642
Alignment:
| Q |
32 |
gggtaataatctggtgtgactatagccacactcagccatacggtgggtc |
80 |
Q |
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| T |
14341690 |
gggtaatattctggcgtggctatagccacaatcagccatacggtgggtc |
14341642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 53786751 - 53786795
Alignment:
| Q |
33 |
ggtaataatctggtgtgactatagccacactcagccatacggtgg |
77 |
Q |
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| T |
53786751 |
ggtaataatctggtgtggttgtagccacactcatccatacggtgg |
53786795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 13413270 - 13413365
Alignment:
| Q |
198 |
ggatggcaaaaccacaactcataaatacaacgttaatgaacata--agacatgacattgttgtgcacgaccttttaaactccgtgtaaaaggtcaa |
291 |
Q |
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| T |
13413270 |
ggatggcaaaaccaattctcataaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaa |
13413365 |
T |
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