View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17903_high_28 (Length: 422)
Name: NF17903_high_28
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 7405903 - 7405511
Alignment:
| Q |
19 |
atgatgatgatagttaaaaagtgtttagtatcttattnnnnnnnnngtgtttagtatctgttttacaaaagtgtttggtatctgttttacaatagctaat |
118 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
7405903 |
atgatgatgatggttaaaaagtgtttagaatcttatctaaaaaaaagtgtttagtatctgttttataaaagtgttcagtatctgttttacaatagctaat |
7405804 |
T |
|
| Q |
119 |
tgattaggttgtcgtcta---------gtgtgattttcaaacacttgaatttattgttgaaagaatcgaacaagaacacaaataatattgttagatataa |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
7405803 |
tgattaggttgtcgtctaactatattggtgtgattttcaaacacttgaatttattgttaaaaaaatcgaacaagaacacaaataatattgttagatacaa |
7405704 |
T |
|
| Q |
210 |
tatgttgagtgaggaactaggtcactctctttaaaatgttacgctgctatgttttaatggtgtaaaagttctttttagactcatcgttcacgtgttaaaa |
309 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
7405703 |
tatgttgaatgaggaactaggtcactctctttaaaatgttacgctgctttgttttaatggtgtaacagttctttttagactcattgttcacaggttaaaa |
7405604 |
T |
|
| Q |
310 |
tgactcttaaatcttaagtatgagtactttctgcgtaaaaagaaacaannnnnnnncttcctatttgtctatttttgaatcatgtgaatgttc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7405603 |
caactcttaaatcttaagtatgagtactttctgcgtaaaaagaaacaattttttttcttcctatttgtctatttttgaatcatgtgaatgttc |
7405511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University