View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_31 (Length: 390)
Name: NF17903_high_31
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 19188308 - 19188670
Alignment:
| Q |
12 |
aagaataataaagggtcaatgcttcatgcctataagagcgagagagtcgccatgttgatccaaaattgtaagatattgataatagggatcatttctctta |
111 |
Q |
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| T |
19188308 |
aagaataataaagggtcaatgcttcatgcctataagagcgagagagtcgccatgttgatccaaaattgtaagatattgatcatagggatcatttctctta |
19188407 |
T |
|
| Q |
112 |
tatagattaattatttcattcataatagatgttggactatctactcacacttgaatgcaacaattttcttctcaagtgtgagaatcttcgacatcctata |
211 |
Q |
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| T |
19188408 |
tatagattaattatttcattcataatagatgttggactatctactcacacttgaatgcaacaattttcttctcaagtgtgagagtcttcgacatcctata |
19188507 |
T |
|
| Q |
212 |
cattcaccacaattattatgaatggaaccatcaagaagacttttaatacaaggatccaagacaaagatccatttgtgctccttcaccaagctgaatcgga |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19188508 |
cattcaccataattattatgaatggaaccatcaagaagacttttaatacaaggatccaagacaaagatccatttgtgctccttcaccaagctaaatcgga |
19188607 |
T |
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| Q |
312 |
gcttggatgccacttattgacggagtccgggctaacaccagaagtaccaactaactaatatac |
374 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19188608 |
gcttggatgccacttattgacggagtccgggctaacatcagaagtaccaactaactaatatac |
19188670 |
T |
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