View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_32 (Length: 381)
Name: NF17903_high_32
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 8456172 - 8456041
Alignment:
| Q |
117 |
agtatttgttttgttgcatacatacagttacactggtggagttacccatgttgatcagctccaacgcaatgatcgaattgagttgtttagagtgtcacat |
216 |
Q |
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| T |
8456172 |
agtatttgttttgttgcatacatacagttacactggtggagttacccatgttgatcagctccaacgcaatgatcgaattgagttgtttagagtgtcacat |
8456073 |
T |
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| Q |
217 |
ggaatggtatggtattaagaggttatttgtga |
248 |
Q |
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| T |
8456072 |
ggaatggtatggtattaagaggttatttgtga |
8456041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 8456258 - 8456178
Alignment:
| Q |
6 |
agaaaataaataaaattagttagtgaggttggttatagggaaagcacacggagatcattcggtcaaccacaatagaaaaat |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8456258 |
agaaaataaataaaattagttagtgaggttggttatagggaaagcacacggagatcattcggtcaaccacaatcgaaaaat |
8456178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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