View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_high_34 (Length: 369)

Name: NF17903_high_34
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_high_34
NF17903_high_34
[»] chr8 (1 HSPs)
chr8 (1-369)||(6473112-6473480)
[»] chr6 (7 HSPs)
chr6 (25-336)||(13608190-13608503)
chr6 (95-168)||(33361317-33361390)
chr6 (95-158)||(33412747-33412810)
chr6 (101-168)||(12782319-12782386)
chr6 (95-158)||(12785768-12785831)
chr6 (95-158)||(33060384-33060447)
chr6 (95-158)||(33390902-33390965)
[»] chr4 (9 HSPs)
chr4 (42-313)||(31244188-31244459)
chr4 (95-158)||(31496144-31496207)
chr4 (95-199)||(31160061-31160165)
chr4 (91-162)||(31482036-31482107)
chr4 (95-158)||(31501314-31501377)
chr4 (269-323)||(31159937-31159991)
chr4 (95-168)||(31020690-31020763)
chr4 (95-168)||(31030571-31030644)
chr4 (95-148)||(31476204-31476257)
[»] chr5 (1 HSPs)
chr5 (24-76)||(17599893-17599945)
[»] chr2 (1 HSPs)
chr2 (95-158)||(17437877-17437940)
[»] scaffold1749 (1 HSPs)
scaffold1749 (281-321)||(812-852)
[»] scaffold0428 (1 HSPs)
scaffold0428 (281-321)||(9573-9613)
[»] chr7 (1 HSPs)
chr7 (24-76)||(14723905-14723957)


Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 6473480 - 6473112
Alignment:
Q  1 tccttagcaagttagttttgggcctttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttcaaataggaggaaatggaaatatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473480 tccttagcaagttagttttgggcctttggctttaacaatttgaatgactcgtagtagcatccaaagtgtctcttcaaataggaggaaatggaaatatgat 6473381  T
Q  101 gtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473380 gtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgata 6473281  T
Q  201 taaacgtcagaaaagggggaaatatatcatctgagcttctacaagctataaaagaatctcatatcttgattgtaattttctcaaaaaactatgcttcttc 300  Q
    ||||| | | |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473280 taaacctaaaaaaagggggaaacatatcatctgagctcctacaagctataaaagaatctcatatcttgattgtaattttctcaaaaaactatgcttcttc 6473181  T
Q  301 cacatggtgcttgcaagaattggcaaatattgctgattgtatccatgtacaaggacaaactgttctacc 369  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  6473180 cacatggtgcttgcaagaattggtaaatattgctgattgcatccatgtacaaggacaaactgttctacc 6473112  T

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Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 25 - 336
Target Start/End: Original strand, 13608190 - 13608503
Alignment:
Q  25 tttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttcaaataggagga---aatggaaatatgatgtgtttgtgagctttcgaggc 121  Q
    ||||||||| |||||||||||| || ||||||||||||||| ||||||||||  ||||||||   |||||||||||||||||||||||||||| || |||    
T  13608190 tttggcttttacaatttcaatggctagtagtagcatccaaactgtctcttcatctaggaggatgaaatggaaatatgatgtgtttgtgagcttccgtggc 13608289  T
Q  122 gaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgatataaacgtcagaaaagggggaa 221  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||  ||||| ||||||| |||| | | |||||||| |     
T  13608290 gaagacacgcgcaacaatttcactgatcatctttttggcgctc-tcataaaaatgacattgttgcattcagagatgatacaaacctaaaaaaaggggaac 13608388  T
Q  222 atatatcatctgagcttctacaagctataaaagaatctcatatcttgattgtaattttctcaaaaaactatgcttcttccacatggtgcttgcaagaatt 321  Q
    ||||||||||  |||||  |||||| ||  ||| ||| ||||| |||||||| || ||||||| ||||||||||||||||||||||||||| |||||| |    
T  13608389 atatatcatccaagcttgaacaagccattgaaggatcccatattttgattgttatcttctcaagaaactatgcttcttccacatggtgcttacaagaact 13608488  T
Q  322 ggcaaatattgctga 336  Q
    |||||| ||||||||    
T  13608489 ggcaaaaattgctga 13608503  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 33361390 - 33361317
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 168  Q
    |||||||||||||| | |||| |||| |||||||| ||||||||||||||||||  |||||||| ||| |||||    
T  33361390 tatgatgtgtttgtcatctttagaggtgaagacactcgcaacaatttcactgattttctttttgatgcccttca 33361317  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 33412810 - 33412747
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 158  Q
    |||||||||||||| | |||  |||| |||||||| |||||||||||||||||| |||||||||    
T  33412810 tatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttg 33412747  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 12782386 - 12782319
Alignment:
Q  101 gtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 168  Q
    ||||||||||||||  |||||  |||||| ||   ||||||||||||||||||||||||||| |||||    
T  12782386 gtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttca 12782319  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 12785831 - 12785768
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 158  Q
    ||||| ||||||||||||||| |||||  |||||| |||  ||||||||| |||||||||||||    
T  12785831 tatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatctttttg 12785768  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 33060447 - 33060384
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 158  Q
    |||||||||||||| | |||| |||| ||||| || ||||||||||||||||||  ||||||||    
T  33060447 tatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttg 33060384  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 33390965 - 33390902
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 158  Q
    |||||||||||||| | ||| ||||| |||||||| ||||||||||||| ||||  ||||||||    
T  33390965 tatgatgtgtttgtcaccttccgaggtgaagacactcgcaacaatttcattgattttctttttg 33390902  T

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Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 42 - 313
Target Start/End: Original strand, 31244188 - 31244459
Alignment:
Q  42 caatgactcgtagtagcatccaaagtgtctcttcaaataggaggaaatggaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaattt 141  Q
    ||||| || ||| |||||||| |||| ||||||||  || || ||||||||||||||||||||||||||||||| |||| |  ||||| |||||||||||    
T  31244188 caatggcttgtaatagcatccgaagtatctcttcacctaagatgaaatggaaatatgatgtgtttgtgagctttagaggtggcgacacacgcaacaattt 31244287  T
Q  142 cactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgatataaacgtcagaaaagggggaaatatatcatctgagcttcta 241  Q
    ||||||||| ||||||||  |||| ||||||||  ||||||||  |||||||||||||| |||  |||  ||||||| ||||||||||||||||||||||    
T  31244288 cactgatcacctttttggcactctccataaaaaaggcattgttaccttcagggatgatacaaagctcaagaaaggggaaaatatatcatctgagcttcta 31244387  T
Q  242 caagctataaaagaatctcatatcttgattgtaattttctcaaaaaactatgcttcttccacatggtgcttg 313  Q
    ||||||||  ||| ||| | ||| |||||||| || || ||||  |||||||||||||| || |||||||||    
T  31244388 caagctattgaaggatcccgtattttgattgttatcttttcaaggaactatgcttcttcaacgtggtgcttg 31244459  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 31496144 - 31496207
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 158  Q
    ||||| |||||||| | |||| |||| || ||||| ||||||||||||||||||||||||||||    
T  31496144 tatgacgtgtttgtcacctttagaggtgaggacactcgcaacaatttcactgatcatctttttg 31496207  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 31160165 - 31160061
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcaggg 194  Q
    ||||| || |||||||||||| ||||| ||||||| | |||||||||  | ||||||||||||| ||| ||||| | |||  |||| ||||  |||||||    
T  31160165 tatgacgtttttgtgagctttagaggccaagacacacacaacaattttgccgatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcaggg 31160066  T
Q  195 atgat 199  Q
    |||||    
T  31160065 atgat 31160061  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 31482036 - 31482107
Alignment:
Q  91 gaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgc 162  Q
    ||||||||| ||||||||||| ||  | || || ||||| || ||||| |||||||||||||||||||||||    
T  31482036 gaaatatgacgtgtttgtgagtttctgtggtgatgacacacgtaacaaattcactgatcatctttttggtgc 31482107  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 31501314 - 31501377
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 158  Q
    ||||||| |||||| |  ||| |||| |||||||| ||||||||||||||| ||||||||||||    
T  31501314 tatgatgcgtttgtcacttttagaggtgaagacactcgcaacaatttcacttatcatctttttg 31501377  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 31159991 - 31159937
Alignment:
Q  269 attgtaattttctcaaaaaactatgcttcttccacatggtgcttgcaagaattgg 323  Q
    |||||| | |||||||||||||||||||| || ||||||||||||| ||| ||||    
T  31159991 attgtactcttctcaaaaaactatgcttcctcaacatggtgcttgcgagagttgg 31159937  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 31020763 - 31020690
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 168  Q
    |||||||||||||| | |||| |||||||||| || |||  ||| |||| |||||||||||||| ||| |||||    
T  31020763 tatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttca 31020690  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 31030644 - 31030571
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 168  Q
    |||||||||||||| | |||| |||||||||| || |||  ||| |||| |||||||||||||| ||| |||||    
T  31030644 tatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttca 31030571  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 31476204 - 31476257
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgat 148  Q
    ||||| ||||||||||||||  |||| ||||| || ||||||||||||||||||    
T  31476204 tatgacgtgtttgtgagcttcagaggtgaagatactcgcaacaatttcactgat 31476257  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 17599945 - 17599893
Alignment:
Q  24 ctttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttca 76  Q
    |||||||||| | ||| |||||| || ||||||||||||||||||||||||||    
T  17599945 ctttggcttttataatatcaatggctagtagtagcatccaaagtgtctcttca 17599893  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 17437877 - 17437940
Alignment:
Q  95 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 158  Q
    |||||||||||||| | |||| |||| ||||| || ||||||||||||||||||  ||||||||    
T  17437877 tatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttg 17437940  T

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Target: scaffold1749 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 852 - 812
Alignment:
Q  281 tcaaaaaactatgcttcttccacatggtgcttgcaagaatt 321  Q
    |||| ||||||||||||||| ||||||||| ||||||||||    
T  852 tcaagaaactatgcttcttcaacatggtgcctgcaagaatt 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 9613 - 9573
Alignment:
Q  281 tcaaaaaactatgcttcttccacatggtgcttgcaagaatt 321  Q
    |||| ||||||||||||||| ||||||||| ||||||||||    
T  9613 tcaagaaactatgcttcttcaacatggtgcctgcaagaatt 9573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 14723905 - 14723957
Alignment:
Q  24 ctttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttca 76  Q
    |||||||||| | ||| |||||| ||  |||||||||||||||||||||||||    
T  14723905 ctttggcttttataatatcaatggctaatagtagcatccaaagtgtctcttca 14723957  T

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