View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_36 (Length: 361)
Name: NF17903_high_36
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 36206551 - 36206800
Alignment:
| Q |
18 |
ccaagcgaggttgtgagagggagttttagaagctatgaattggaagagttgtgccggataacttggccttgcatttgaatattcctttgcctgattcaca |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36206551 |
ccaaacgaggttgtgagagggagttttagaagctatgaattggaagagttgtggtggataacttggccttgcatttgaatattcccttgcctgattcaca |
36206650 |
T |
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| Q |
118 |
taaagttctgccatctctattctcttcttaattcgctataacttatttcctaataatttttagatcagacttgaatttgcatctttcattgcccattgca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
36206651 |
taaagttctgccatctctattctcttcttaattcgctataactaatttcctaataatttttagatcagactcaaatttgcatctttgattgcccattgca |
36206750 |
T |
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| Q |
218 |
tttgcac----tatatatagtaattcattacaattgaaccttagtttgaa |
263 |
Q |
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| T |
36206751 |
tttgcactatatatatatagtaattcatgacgatcggaccttagtttgaa |
36206800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 35401808 - 35401696
Alignment:
| Q |
25 |
aggttgtgagagggagttttagaagctatgaattggaagagttgtgccggataacttggccttgcatttgaatattcctttgcctgattcacataaagtt |
124 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || ||||||||| ||||||||||| |||| | |
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| T |
35401808 |
aggttgtgagagggagttttagaagctatgaattgaaagagttgtggtggataacttggccttgcatctgcgtattcctttccctgattcacaaaaagct |
35401709 |
T |
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| Q |
125 |
ctgccatctctat |
137 |
Q |
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||||||||||||| |
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| T |
35401708 |
ctgccatctctat |
35401696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 36210318 - 36210450
Alignment:
| Q |
18 |
ccaagcgaggttgtgagagggagttttagaagctatgaattggaagagttgtgccggataacttggccttgcatttgaatattcctttgcctgattcaca |
117 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||| |||| ||| || |
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| T |
36210318 |
ccaagcaaggtcgtgagagggagttttagaagctatgaattggaagagttgtggtggataacttggccttgaatctgcatattcctttccctgtttcgca |
36210417 |
T |
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| Q |
118 |
taaagttctgccatctctattctcttcttaatt |
150 |
Q |
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|| | |||||||| |||||||||| ||||||| |
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| T |
36210418 |
aaatgctctgccatttctattctctccttaatt |
36210450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 35399080 - 35398974
Alignment:
| Q |
25 |
aggttgtgagagggagttttagaagctatgaattggaagagttgtgccggataacttggccttgcatttgaatattcctttgcctgattcacataaagtt |
124 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || ||||||||| ||||||||||| |||| | |
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| T |
35399080 |
aggttgtgagagggagttttagaagctatgaattgaaagagttgtggtggataacttggccttgcatctgcgtattcctttccctgattcacaaaaagct |
35398981 |
T |
|
| Q |
125 |
ctgccat |
131 |
Q |
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||||||| |
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| T |
35398980 |
ctgccat |
35398974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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