View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_high_37 (Length: 352)

Name: NF17903_high_37
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_high_37
NF17903_high_37
[»] chr2 (3 HSPs)
chr2 (19-150)||(42877534-42877670)
chr2 (281-326)||(42877792-42877837)
chr2 (206-243)||(42877726-42877763)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 42877534 - 42877670
Alignment:
Q  19 ccggtaatgtatttatgatcacataacaaatcatatatccaaaacaagtggaattttacttttgagaaagagaaatcccatgtgactggagttaaatact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42877534 ccggtaatgtatttatgatcacataacaaatcatatatccaaaacaagtggaattttacttttgagaaagagaaatcccatgtgactggagttaaatact 42877633  T
Q  119 aa-----atattgtaatgcatatgtggtgtcatatat 150  Q
    ||     ||||||||||||||||||||||||||||||    
T  42877634 aaataatatattgtaatgcatatgtggtgtcatatat 42877670  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 42877792 - 42877837
Alignment:
Q  281 tgctgactaagaagcacgggaaacaagtgaaaggagtatgaactat 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  42877792 tgctgactaagaagcacgggaaacaagtgaaaggagtatgaactat 42877837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 42877726 - 42877763
Alignment:
Q  206 tgttgtgatatatttattttgacgtggtgacaatgtga 243  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42877726 tgttgtgatatatttattttgacgtggtgacaatgtga 42877763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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