View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_43 (Length: 340)
Name: NF17903_high_43
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 18233705 - 18234020
Alignment:
| Q |
10 |
aaaatcactccaataaggatgcttctcccatacggttgacatttcttcgattggaactcccttcgtctctggcaaaaacttgtaaataaatccagtcatc |
109 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18233705 |
aaaatcactccaataaggatgtttctcccatacggttgacatttcttcgattggaactcccttcgtctctggcaaaaacttgtaaataaatccagtcatc |
18233804 |
T |
|
| Q |
110 |
acaacaacgaaaaaggcgaagaagataaataacccaaacttcatgtgacaaagcattgtagtgaagatttgagcaatgataaaagtgcaaatcatgttaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
18233805 |
acaacaacgaaaaaggcgaagaagataaataatccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatcatgttaa |
18233904 |
T |
|
| Q |
210 |
cagagacattgatactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaatcctgc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18233905 |
cagagacattgatactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaatcctgc |
18234004 |
T |
|
| Q |
310 |
tacgtacacacaaatg |
325 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
18234005 |
tacgtacacacaaatg |
18234020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 48 - 299
Target Start/End: Original strand, 41971356 - 41971607
Alignment:
| Q |
48 |
acatttcttcgattggaactcccttcgtctctggcaaaaacttgtaaataaatccag-tcatcacaacaacgaaaaaggcgaagaagataaataacccaa |
146 |
Q |
| |
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|||||||||| || ||||| || || ||||| |||||||||||||||||||| | || ||||||| || || ||||| || |||||||| || | |||| |
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| T |
41971356 |
acatttcttcaataggaacacctttggtctccggcaaaaacttgtaaataaa-caagctcatcaccaccacaaaaaatgcaaagaagatgaagagtccaa |
41971454 |
T |
|
| Q |
147 |
acttcatgtgacaaagcattgtagtgaagatttgagcaatgataaaagtgcaaatcatgttaacagagacattgatactttgagccgcagaacgaacttc |
246 |
Q |
| |
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|||||||||| || ||| || ||||| | | |||||||| ||| ||| ||||||||||||| || ||||||| |||||||||||| || || || || |
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| T |
41971455 |
acttcatgtggcacgacatggtggtgaaaactcgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacactttgagccgctgatcgcacctc |
41971554 |
T |
|
| Q |
247 |
gagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatg |
299 |
Q |
| |
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||||| || ||||||||||||||||||| || ||||||||||||||||||| |
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| T |
41971555 |
aagtggaaaagtttcacttggcaccaaccatccaagaggaccccaagaccatg |
41971607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 304
Target Start/End: Original strand, 35489657 - 35489818
Alignment:
| Q |
143 |
ccaaacttcatgtgacaaagcattgtagtgaagatttgagcaatgataaaagtgcaaatcatgttaacagagacattgatactttgagccgcagaacgaa |
242 |
Q |
| |
|
|||||||||| |||||||||||| ||| || | ||||||||||||||| ||| | | |||||| || | |||||| || |||| | ||||| || | |
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| T |
35489657 |
ccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcactgcaacattggtagcttgacctgcagatcgga |
35489756 |
T |
|
| Q |
243 |
cttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaat |
304 |
Q |
| |
|
|||| || | | |||||||||| || || ||||| || || | ||||||||||||||||||| |
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|
| T |
35489757 |
cttcaagagagcatatttcactgggaactaaccatcccagcgcaccccaagaccatgcaaat |
35489818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 45 - 324
Target Start/End: Complemental strand, 42552473 - 42552194
Alignment:
| Q |
45 |
ttgacatttcttcgattggaactcccttcgtctctggcaaaaacttgtaaataaatccagtcatcacaacaacgaaaaaggcgaagaagataaataaccc |
144 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||| || | ||||||||||||||| | ||||||| || || |||||||||||||||||||| || || |
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| T |
42552473 |
ttgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaatgctgtcatcagaaaaagaaaaaaggcgaagaagataaacaatcc |
42552374 |
T |
|
| Q |
145 |
aaacttcatgtgacaaagcattgtagtgaagatttgagcaatgataaaagtgcaaatcatgttaacagagacattgatactttgagccgcagaacgaact |
244 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| || |||||||| |||||||||| | |
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|
| T |
42552373 |
aaacttcatgtaacaaagcattgtagtgaaaatttgagcaatgacaaaggtgcaaatcatgttaacagagacattaatgctttgagcagcagaacgaatt |
42552274 |
T |
|
| Q |
245 |
tcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaatcctgctacgtacacacaaat |
324 |
Q |
| |
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|| || || || || ||||| ||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||| |
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|
| T |
42552273 |
tcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacacacaaat |
42552194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 47 - 303
Target Start/End: Original strand, 42517468 - 42517724
Alignment:
| Q |
47 |
gacatttcttcgattggaactcccttcgtctctggcaaaaacttgtaaataaatccag-tcatcacaacaacgaaaaaggcgaagaagataaataaccca |
145 |
Q |
| |
|
||||||||||| |||||||| || || ||||| |||||||||||||||||||| | || |||| || ||||| ||||| || |||||||| |||| ||| |
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|
| T |
42517468 |
gacatttcttcaattggaacacctttggtctccggcaaaaacttgtaaataaa-caagctcataaccacaacaaaaaatgcaaagaagatgaatagtcca |
42517566 |
T |
|
| Q |
146 |
aacttcatgtgacaaagcattgtagtgaagatttgagcaatgataaaagtgcaaatcatgttaacagagacattgatactttgagccgcagaacgaactt |
245 |
Q |
| |
|
||||||||||| || | ||| | ||||| | |||||||||| ||| ||| |||||||||||||||| ||||||| ||||||||| || || || || | |
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| T |
42517567 |
aacttcatgtggcacaacatggcggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaacagaaacattgacactttgagctgctgatcgcacct |
42517666 |
T |
|
| Q |
246 |
cgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaa |
303 |
Q |
| |
|
| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
42517667 |
caagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaa |
42517724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 306
Target Start/End: Original strand, 1238850 - 1239108
Alignment:
| Q |
48 |
acatttcttcgattggaactcccttcgtctctggcaaaaacttgtaaataaatccag-tcatcacaacaacgaaaaaggcgaagaagataaataacccaa |
146 |
Q |
| |
|
|||||||||| || ||||| || || ||||| ||||||||||||||||||| | || ||||||| || || |||| || |||||||| || | |||| |
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|
| T |
1238850 |
acatttcttcaataggaacacctttggtctcctgcaaaaacttgtaaataaa-caagctcatcaccaccaccaaaagtgcaaagaagatgaagagtccaa |
1238948 |
T |
|
| Q |
147 |
acttcatgtgacaaagcattgtagtgaagatttgagcaatgataaaagtgcaaatcatgttaacagagacattgatactttgagccgcagaacgaacttc |
246 |
Q |
| |
|
|||||||||| || | ||| || ||||| | |||||||||| ||| ||| ||||||||||||| || ||||||| |||||||||||| || ||||| || |
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|
| T |
1238949 |
acttcatgtggcacaacatggtggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacactttgagccgctgatcgaacctc |
1239048 |
T |
|
| Q |
247 |
gagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaatcc |
306 |
Q |
| |
|
||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
1239049 |
aagtggaaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcgaatcc |
1239108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 315
Target Start/End: Complemental strand, 36202883 - 36202690
Alignment:
| Q |
122 |
aaggcgaagaagataaataacccaaacttcatgtgacaaagcattgtagtgaagatttgagcaatgataaaagtgcaaatcatgttaacagagacattga |
221 |
Q |
| |
|
||||| ||||||| || || |||||||||||||||||||||||| | ||| | ||| |||| | || ||| ||| |||||| ||||| || || | |
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|
| T |
36202883 |
aaggcaaagaagaggaacaaaccaaacttcatgtgacaaagcattatcaagaaaacttgtgcaactaagaaggtgaaaagcatgttcacagatacgttta |
36202784 |
T |
|
| Q |
222 |
tactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaatcctgctacgta |
315 |
Q |
| |
|
||||||||| |||||||||| || | |||||| || ||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||| |
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|
| T |
36202783 |
cactttgagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaatcctgctacgta |
36202690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 312
Target Start/End: Original strand, 35922146 - 35922354
Alignment:
| Q |
104 |
gtcatcacaacaacgaaaaaggcgaagaagataaataacccaaacttcatgtgacaaagcattgtagtgaagatttgagcaatgataaaagtgcaaatca |
203 |
Q |
| |
|
|||||||| || || || ||||| ||||||||||| || ||||||||||||||||| |||| || ||| | ||| |||| | || ||| ||| || |
|
|
| T |
35922146 |
gtcatcaccactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaaca |
35922245 |
T |
|
| Q |
204 |
tgttaacagagacattgatactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaa |
303 |
Q |
| |
|
|||| ||||| ||||||| ||||||||| || || |||| || | ||| || || ||||||| |||||||||||| ||||||||||| ||||| | ||| |
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|
| T |
35922246 |
tgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgaccaagaaaa |
35922345 |
T |
|
| Q |
304 |
tcctgctac |
312 |
Q |
| |
|
| ||||||| |
|
|
| T |
35922346 |
tgctgctac |
35922354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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