View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_51 (Length: 315)
Name: NF17903_high_51
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_51 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 303
Target Start/End: Complemental strand, 46938263 - 46937981
Alignment:
| Q |
21 |
agatactctgatggccggctcatcattgattttcttagtaacaactaaatctccataaattaaaaagtgtggannnnnnnnctttctttcgtcttcctaa |
120 |
Q |
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| T |
46938263 |
agatactctgatggccggctcatcattgattttcttagtaacaactaaatctccataaattaaaaagtgtggattttttttctttctttcgtcttcctaa |
46938164 |
T |
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| Q |
121 |
tgatgttgtcttggatgttgttttcagtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaaaggttg |
220 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46938163 |
tgatattgtcttggatgttgttttcagtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaaaggttg |
46938064 |
T |
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| Q |
221 |
taacttcgcagcagctggttcaactatccttccagccactgcatcatccatctgccctttctcctttgggattcaggtgtctc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46938063 |
taacttcgcagcagctggttcaactatccttccagccactgcatcatccatctgccctttctcctttgggattcaggtgtctc |
46937981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 36633973 - 36634084
Alignment:
| Q |
145 |
cagtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaaaggttgtaacttcgcagcagctggttcaac |
244 |
Q |
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||||||||||| |||| || |||||||||||||| ||| |||||||| |||| | ||||||||| | || || ||||| |||||||| |||||||| |
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| T |
36633973 |
cagtggatgcaatggacttgccattcttaaatgcctatctggattcagtgggctcgccaaatttccatcacggatgcaactttgcagcagcaggttcaac |
36634072 |
T |
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| Q |
245 |
tatccttccagc |
256 |
Q |
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| T |
36634073 |
tatccttccagc |
36634084 |
T |
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