View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_55 (Length: 305)
Name: NF17903_high_55
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_55 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 39264040 - 39264327
Alignment:
| Q |
18 |
gatttactgagtgtgaatttgagattaatgagtctagagcttcctcttcatgttaatgtagttgaatttgctattgattccattgatatcattcaacaac |
117 |
Q |
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| T |
39264040 |
gatttactgagtgtgaatttgagattgatgggtctagagcttcctcttcatgttaatgtagttgaatttgctattgattccattgatgtcattcaacaac |
39264139 |
T |
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| Q |
118 |
aacaacaatggcaggtggaaaccgaaacaccaaggcgattgcaagggacaacgcaacaaaagaaaggcggagatgatgaacaacaaggtgacgataaaag |
217 |
Q |
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| T |
39264140 |
aacaacaatggcaggtggaaaccgaaacaccaaggcgattgcaagggacaacgcaacaaaagaaaggcagagatgatgaacaacaaggtgacgataaaag |
39264239 |
T |
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| Q |
218 |
tggtaagttcactttgcaacagctctttcaacaatctaaagtaattgatgaagatatcatcaataagactggaactgggatggatttc |
305 |
Q |
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| T |
39264240 |
tggtaagttcactttgcaacagctctttcaacaatctaaagtaattgatgaagatatcatcaataagactggaactgggatggatttc |
39264327 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 44067784 - 44067858
Alignment:
| Q |
29 |
tgtgaatttgagattaatgagtctagagcttcctcttcatgttaatgtagttgaatttgctattgattccattga |
103 |
Q |
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| T |
44067784 |
tgtgaatctgaggttgatgggtttagagcttcctcttcatgtcaacattgttgagtttgctattgaatccattga |
44067858 |
T |
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