View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_56 (Length: 304)
Name: NF17903_high_56
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_56 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 13768377 - 13768093
Alignment:
| Q |
1 |
ttgttgccatgccagtgaggagtgttacagccgcaaatgagtgaggnnnnnnnnnnnnnngtttgtgcgtattagggtttagggttgcagaagcgggtta |
100 |
Q |
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| T |
13768377 |
ttgttgccatgccagcgaggagtgttacagccgcaaatgagtgag-aaaaaaacaaaaaagtttgtgcggattagggtttagggttgcagacgcaggtta |
13768279 |
T |
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| Q |
101 |
tgcgattcctgctgaaccatggtatgctactattcattattttattattctgttccatcctttcatagttctccttttcatatattcatatatgtgtatt |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13768278 |
tgcgattcctgctgaaccatggtatgttactattcattattttattattctgttccatcctttcatagttctccttttcatatattcatatatttgtatt |
13768179 |
T |
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| Q |
201 |
tctactgtcatcgtctgttagtaaattggaaaaatgagattcatgttgcatttgttggcttcaattttgttttcaattgatatgtc |
286 |
Q |
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| T |
13768178 |
tctactgtcatcgtctgttagtaaattggaaaaatgagattcatgttgcatttgttggcttcaattttgttttcaattgatatgtc |
13768093 |
T |
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Target: scaffold0188 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 14298 - 14354
Alignment:
| Q |
145 |
ttattctgttccatcctttcatagttctccttttcatatattcatatatgtgtattt |
201 |
Q |
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| T |
14298 |
ttattctgttccatcctttcatagttgtccttctcatatattcatttatgtgtattt |
14354 |
T |
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