View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17903_high_57 (Length: 304)
Name: NF17903_high_57
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_57 |
 | |
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| [»] chr5 (2 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 50 - 304
Target Start/End: Complemental strand, 34355584 - 34355330
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355584 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
34355485 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355484 |
tgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
34355385 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34355384 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
34355330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 50 - 304
Target Start/End: Complemental strand, 41721984 - 41721730
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41721984 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctt |
41721885 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721884 |
tgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaag |
41721785 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41721784 |
tctgctgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
41721730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 48698564 - 48698818
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48698564 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctt |
48698663 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698664 |
tgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaag |
48698763 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48698764 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
48698818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 30946926 - 30947180
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30946926 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctt |
30947025 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947026 |
tattggggcctaccaccaatatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaag |
30947125 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30947126 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
30947180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 50 - 304
Target Start/End: Complemental strand, 42269477 - 42269223
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42269477 |
tctcggtgaatttgcatccctaagatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctt |
42269378 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269377 |
tgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaag |
42269278 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42269277 |
tctgctgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
42269223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 50 - 303
Target Start/End: Complemental strand, 2002457 - 2002204
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| | |||| || ||| |
|
|
| T |
2002457 |
tctcgatgaatttgcatccctaaaatcttgtttgctggccccaagtccttcatatcgaactccctagccaattgtgcctttaattcttagacttgatctt |
2002358 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||| | ||||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
2002357 |
tgttgggtcctaccaccaacatgtcatccacaaacaacaacaaaatgataaaatcattattaccaaacctattgtagtatgtacaatggtctgaattaag |
2002258 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatct |
303 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
2002257 |
tctgttgtatccaaggctaactatgaaagaatcaaatctcttgtaccaacatct |
2002204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 5820018 - 5820272
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5820018 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctt |
5820117 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820118 |
tgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaag |
5820217 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5820218 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
5820272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 50 - 303
Target Start/End: Complemental strand, 42588522 - 42588269
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| |||||| || ||| |
|
|
| T |
42588522 |
tctcgatgaatttgcatccctaaaatcttgtttgctggccccaagtccttcatatcgaactccctagccaattgtgcatttaattcttggacttgatctt |
42588423 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
42588422 |
tgttgggtcctaccaccaacatgtcatccacatacaacaacaaaatgataaaatcattattaccaaacctattgtagtatgtacaatggtctgaattaag |
42588323 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatct |
303 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
42588322 |
tctgttgtatccaaggctaactatgaaagaatcaaatctcttgtaccaacatct |
42588269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 54544719 - 54544598
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |
|
|
| T |
54544719 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcttagacccgatctt |
54544620 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacat |
171 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
54544619 |
tgttggggcctaccaccaacat |
54544598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 25877874 - 25877805
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagcca |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| || |||| |||||||||||||||||||||| |
|
|
| T |
25877874 |
tctcggtgaatttgcatccttaaaatcttgttttctggcccagagtccttcatatcgaactccctagcca |
25877805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 9440834 - 9441088
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9440834 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctt |
9440933 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440934 |
tgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaag |
9441033 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9441034 |
tctgctgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
9441088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 50 - 303
Target Start/End: Original strand, 24595234 - 24595487
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||| |||||||| ||||| |||||| || ||| |
|
|
| T |
24595234 |
tctcgatgaatttgcatccctaaaatcttgtttgctggccccaagtccttcatattgaactctctagccaattgtgcctttaattcttggacttgatctt |
24595333 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
24595334 |
tgttgggtcctaccaccaacatgtcatccacatacaacaacaaaatgataaaatcattattaccaaacctattgtagtatgtacaatggtctgaattaag |
24595433 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatct |
303 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
24595434 |
tctgttgtatccaaggctaactatgaaagaatcaaatctcttgtaccaacatct |
24595487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 50 - 304
Target Start/End: Complemental strand, 829053 - 828799
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
829053 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctt |
828954 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828953 |
tgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattatcatcaaaccttttgtagtacgtacaatggtctgaactaag |
828854 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
828853 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
828799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 56 - 294
Target Start/End: Original strand, 13841666 - 13841900
Alignment:
| Q |
56 |
tgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactttgttgg |
155 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| ||||||||| | |||||||| | || || |||||||| ||||| | ||||||||| |
|
|
| T |
13841666 |
tgaatttgtatccttaaaatcttgtttgctggtcccaagtc----atatcgaacacactagccaattttgtctgcaattcctcgactcaatctttgttgg |
13841761 |
T |
|
| Q |
156 |
ggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgtt |
255 |
Q |
| |
|
| | ||||||||| ||||| |||| | |||||| ||||||||||||||| || ||| ||| |||| |||||||||||||| || |||| |||||||| |
|
|
| T |
13841762 |
gtcctaccaccaatatgtcgtccatacacaacaacaaaatgataaaatcgttatcataaaaaaatttgcagtacgtacaatggcctaaactcagtctgtt |
13841861 |
T |
|
| Q |
256 |
gtaatcgaggctaattatgaaagaatcaaatctcttgta |
294 |
Q |
| |
|
||||| ||||||||||| ||||||| |||| ||||||| |
|
|
| T |
13841862 |
gtaatgaaggctaattatcaaagaattaaatatcttgta |
13841900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 28714657 - 28714582
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtg |
125 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28714657 |
tctcagtgaatttacatccctaaaatcttgtttgttggtcccaagtctttcatatcgaactccctaaccaactgtg |
28714582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 26977636 - 26977890
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |
|
|
| T |
26977636 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcttggacccgatctt |
26977735 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977736 |
tgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaag |
26977835 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26977836 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
26977890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 27875452 - 27875706
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
27875452 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcttggactcgatctt |
27875551 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
27875552 |
ttttggggcctaccaccaatatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgttcaatggtcttaactaag |
27875651 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27875652 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatctg |
27875706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 1473207 - 1473327
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| |||||||| ||||| |||||| || ||| |
|
|
| T |
1473207 |
tctcgatgaatttgcatccctaaaatcttgtttgctggacccaagtccttcatatcaaactccctggccaattgtgcctttaattcttggacttgatctt |
1473306 |
T |
|
| Q |
150 |
tgttggggcttaccaccaaca |
170 |
Q |
| |
|
||||||| | ||||||||||| |
|
|
| T |
1473307 |
tgttgggtcctaccaccaaca |
1473327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 21964956 - 21964817
Alignment:
| Q |
64 |
catccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttacc |
163 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||| ||||||||||||||||| || |||||||| || ||| | |||||||||||| |||| |
|
|
| T |
21964956 |
catctctaaaatcttgtttattagtcccaagtctttcatattgaactccctagccaactatgtattcaattcatgaactaggtctttgttggggcctacc |
21964857 |
T |
|
| Q |
164 |
accaacatgtcatccacatacaacagcaaaatgataaaat |
203 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
21964856 |
accaacatgtaatccacatacaacagtaaagtgataaaat |
21964817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 297
Target Start/End: Original strand, 18148080 - 18148193
Alignment:
| Q |
184 |
caacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatca |
283 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| |||||| || ||| | ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
18148080 |
caacagcaaaatgataaaatcattaccataaaaccttttgtagtatgtacaacagtgagaaattagtttgttgtaatcgaaactaattatgaaagaatca |
18148179 |
T |
|
| Q |
284 |
aatctcttgtacca |
297 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
18148180 |
attgtcttgtacca |
18148193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 28778 - 29032
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |
|
|
| T |
28778 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaattgtgccttcaattcccggactcgacctt |
28877 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28878 |
tgttgggtcctaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
28977 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctg |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
28978 |
tctgttgtaattgaggctaattatgaaagaatcaaatctcttgcaccaacatctg |
29032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 50 - 303
Target Start/End: Original strand, 7506319 - 7506572
Alignment:
| Q |
50 |
tctcggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactt |
149 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||| ||||| |||||| || ||| |
|
|
| T |
7506319 |
tctcgatgaatttgcatccctaaaatcttgtttgctgaccccaagttcttcatatcgaactccctagccaattatgcctttaattcttggacttgatctt |
7506418 |
T |
|
| Q |
150 |
tgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaag |
249 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
7506419 |
tgttgggtcctaccaccaacatgtcatccacatacaataacaaaatgataaaatcattatcaccaaacctattgtagtatgtacaatggtctgaattaag |
7506518 |
T |
|
| Q |
250 |
tctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatct |
303 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
7506519 |
tctgttgtattcaaggctaactatgaaagaatcaaatctcttgtaccaacatct |
7506572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 34973104 - 34972958
Alignment:
| Q |
54 |
ggtgaatttgcatccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactttgtt |
153 |
Q |
| |
|
||||| |||||||| |||||| || ||||||| |||||||||||||||||| ||| |||||| |||| |||||||||||| | ||||| | |||||| |
|
|
| T |
34973104 |
ggtgagtttgcatcgctaaaacctggtttgctagtcccaagtctttcatattgaattccctaaccaattgtgccttcaatacttggacctaatatttgtt |
34973005 |
T |
|
| Q |
154 |
ggggcttaccaccaacatgtcatccacatacaacagcaaaatgataa |
200 |
Q |
| |
|
||||| || |||||||||||| |||| |||||| | |||||| |||| |
|
|
| T |
34973004 |
ggggcctaacaccaacatgtcgtccatatacaataacaaaataataa |
34972958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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