View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_59 (Length: 298)
Name: NF17903_high_59
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_59 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 6254876 - 6255144
Alignment:
| Q |
19 |
gtgtgagactggaatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctataatagttt |
118 |
Q |
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| T |
6254876 |
gtgtgagattggaatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctataatagttt |
6254975 |
T |
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| Q |
119 |
taatatttctatgttagttttaaagttttttgaacttttaatcaagcttatgtatcagacttgtcaagtagtgtgaatgagatattttgattatgtttca |
218 |
Q |
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| T |
6254976 |
taatatttctatgttagttttaaagttttttgaacttttaatcaagcttatgtatcagacttggcaagtagtctgaatgagatattttgattatgtttca |
6255075 |
T |
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| Q |
219 |
tgaaatatccaccttaaagtataattattgtcgacttttttgagttagtgcttcttcgtttattgttcat |
288 |
Q |
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| T |
6255076 |
tgaaatatccaccttaaagtataattattgtcgacttttttgcgttagtgcttcttcg-ttattgttcat |
6255144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 288
Target Start/End: Complemental strand, 10599371 - 10599106
Alignment:
| Q |
22 |
tgagactggaatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctataatagttttaa |
121 |
Q |
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| T |
10599371 |
tgagactggaatttcaagtgctttctatcaaattaattttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctataatagttttaa |
10599272 |
T |
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| Q |
122 |
tatttctatgttagttttaaagttttttgaacttttaatcaagcttatgtatcagacttgtcaagtagtgtgaatgagatattttgattatgtttcatga |
221 |
Q |
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| T |
10599271 |
tatttttatgttagtttt-aagttttttgaacttttaatcaaacttatttatcagacttggcaagtagtgtgaatgagatttttttattatgtttcatga |
10599173 |
T |
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| Q |
222 |
aatatccaccttaaagtataattattgtcga-cttttttgagttagtgcttcttcgtttattgttcat |
288 |
Q |
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| T |
10599172 |
aatatccaccttaaagtataattattgtcgattttttttgagttagtgcttcttcg-ttattgttcat |
10599106 |
T |
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