View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_high_60 (Length: 294)
Name: NF17903_high_60
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 34282773 - 34283038
Alignment:
| Q |
18 |
gtggggtacaatggatttagttgcaaagggtcttggttatcatgtggatcaaagactcaacttttgccaattggagaagggcttttggtgacaagatttg |
117 |
Q |
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| T |
34282773 |
gtggggtacaatggatttagttgcaaagggtcttggttatcatgtggatcaaagactcaacttttgccaattggagaagggcttttggtgacaagatttg |
34282872 |
T |
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| Q |
118 |
gaataagtgagaataatagtccaagatatggaacaagtagatcaatgggaaagattaaaagtcgttgggttgttaaggttgataaatgcactggtgagga |
217 |
Q |
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| T |
34282873 |
gaataagtgagaataatagtccaagatatggaacaagtagatcaatgggaaagattaaaagtcgttgggttgttaaggttgataaatgcactggtgagga |
34282972 |
T |
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| Q |
218 |
acatgtgtttagggttagatttcctcacgggaaagttattcaagcttaattaattttgtggttcat |
283 |
Q |
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| T |
34282973 |
acatgtgtttagggttagatttcctcacgggaaagttattcaagcttaattaattttgtggttcat |
34283038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 20749780 - 20749687
Alignment:
| Q |
176 |
aagtcgttgggttgttaaggttgataaatgcactggtgaggaacatgtgtttagggttagatttcctcacgggaaagttattcaagcttaatta |
269 |
Q |
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| T |
20749780 |
aagtcgttggattgtgaaggttgataaatgtactggtgaagaacatgtttatagagttagacttcctcaaggaaaagtgatttatgcttaatta |
20749687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 20761792 - 20761727
Alignment:
| Q |
176 |
aagtcgttgggttgttaaggttgataaatgcactggtgaggaacatgtgtttagggttagatttcc |
241 |
Q |
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| T |
20761792 |
aagtcgttggattgtgaaggttgataaatgtactggtgaagaacatgtttatagagttagacttcc |
20761727 |
T |
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