View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_high_93 (Length: 228)

Name: NF17903_high_93
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_high_93
NF17903_high_93
[»] chr6 (2 HSPs)
chr6 (19-211)||(9411964-9412156)
chr6 (110-157)||(6596310-6596357)
[»] chr1 (4 HSPs)
chr1 (19-211)||(7555032-7555230)
chr1 (116-165)||(9581627-9581676)
chr1 (116-165)||(9587198-9587247)
chr1 (111-144)||(52094092-52094125)
[»] chr4 (4 HSPs)
chr4 (105-158)||(1755479-1755532)
chr4 (95-144)||(2373565-2373614)
chr4 (105-170)||(7225225-7225290)
chr4 (107-151)||(659977-660021)
[»] chr8 (3 HSPs)
chr8 (105-145)||(18314728-18314768)
chr8 (105-154)||(32151894-32151943)
chr8 (105-145)||(14004069-14004109)
[»] chr3 (1 HSPs)
chr3 (105-147)||(51763487-51763529)
[»] chr7 (1 HSPs)
chr7 (105-150)||(7977799-7977844)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 9411964 - 9412156
Alignment:
Q  19 taatcttggtgagtttgaaaagtgtcaatgaaagagtctctaccctattaagaaagctatgatccttaaatttacggggataacacaggtcgagttcttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9411964 taatcttggtgagtttgaaaagtgtcaatgaaagagtctctaccctattaagaaagctatgatccttaaatttacggggataacacaggttgagttcttc 9412063  T
Q  119 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccattcttgagcaagtgaatgaggttaaagttgtaatatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9412064 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccattcttgaggaagtgaatgaggttaaagttgtaatatt 9412156  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 6596357 - 6596310
Alignment:
Q  110 gagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcatt 157  Q
    ||||||||  ||||| |||||||| |||||||||||||||||||||||    
T  6596357 gagttctttgagcaatgggaaacaatcagcaatgagtaacaagtcatt 6596310  T

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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 7555032 - 7555230
Alignment:
Q  19 taatcttggtgagtttgaaaagtgtcaatgaaagagtctctaccctattaagaaag---ctatgatccttaaattta---cggggataacacaggtcgag 112  Q
    ||||| ||||||||||| |||||| ||||||||||||||| | || |||||| |||   ||||||||||||||||||   |||||||||| ||||| |||    
T  7555032 taatcctggtgagtttggaaagtgccaatgaaagagtctccaacccattaaggaagttactatgatccttaaatttattacggggataacccaggttgag 7555131  T
Q  113 ttcttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccattcttgagcaagtgaatgaggttaaagttgtaatatt 211  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||| |||||||||||||||||||||    
T  7555132 ttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatatt 7555230  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 9581627 - 9581676
Alignment:
Q  116 ttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctattga 165  Q
    |||||| ||||| |||||||| |||||||| ||||||||||| |||||||    
T  9581627 ttcaagtaaaggaaaacattcggcaatgaggaacaagtcattactattga 9581676  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 9587198 - 9587247
Alignment:
Q  116 ttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctattga 165  Q
    |||||| |||||||||||||  |||||||| ||||||||||| |||||||    
T  9587198 ttcaagtaaagggaaacatttggcaatgaggaacaagtcattactattga 9587247  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 52094092 - 52094125
Alignment:
Q  111 agttcttcaagcaaagggaaacattcagcaatga 144  Q
    ||||||||||| ||||||||||||||||||||||    
T  52094092 agttcttcaaggaaagggaaacattcagcaatga 52094125  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 1755479 - 1755532
Alignment:
Q  105 aggtcgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcattg 158  Q
    |||| |||||||||||||||||||||||| ||||||||||| || |||||||||    
T  1755479 aggttgagttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattg 1755532  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 2373614 - 2373565
Alignment:
Q  95 gggataacacaggtcgagttcttcaagcaaagggaaacattcagcaatga 144  Q
    |||||||| || ||| |||||||| |||||||||||||| ||||||||||    
T  2373614 gggataactcaagtcaagttcttcgagcaaagggaaacaatcagcaatga 2373565  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 7225290 - 7225225
Alignment:
Q  105 aggtcgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaa 170  Q
    |||||||||||||| |||||||||||||| || || ||||| |||| |||| ||||| ||| ||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaa 7225225  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 659977 - 660021
Alignment:
Q  107 gtcgagttcttcaagcaaagggaaacattcagcaatgagtaacaa 151  Q
    ||||||||| ||||||||||||||||| ||||| ||||| |||||    
T  659977 gtcgagttcgtcaagcaaagggaaacaatcagctatgagaaacaa 660021  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 18314768 - 18314728
Alignment:
Q  105 aggtcgagttcttcaagcaaagggaaacattcagcaatgag 145  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaacaatcagcaatgag 18314728  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 32151894 - 32151943
Alignment:
Q  105 aggtcgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtc 154  Q
    ||||| |||||||| |||||||||||||| || |||||||| ||||||||    
T  32151894 aggtcaagttcttcgagcaaagggaaacaatcggcaatgaggaacaagtc 32151943  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 14004069 - 14004109
Alignment:
Q  105 aggtcgagttcttcaagcaaagggaaacattcagcaatgag 145  Q
    |||||||||||||| |||||||| ||||| |||||||||||    
T  14004069 aggtcgagttcttctagcaaaggaaaacaatcagcaatgag 14004109  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 51763529 - 51763487
Alignment:
Q  105 aggtcgagttcttcaagcaaagggaaacattcagcaatgagta 147  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||    
T  51763529 aggtcgagttcttcgagcaatgggaaacattccgcaatgagta 51763487  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 7977799 - 7977844
Alignment:
Q  105 aggtcgagttcttcaagcaaagggaaacattcagcaatgagtaaca 150  Q
    ||||||||||||||||||||||||||||| || || ||||| ||||    
T  7977799 aggtcgagttcttcaagcaaagggaaacaatctgctatgagaaaca 7977844  T

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