View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17903_low_101 (Length: 224)
Name: NF17903_low_101
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_101 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33990852 - 33990629
Alignment:
| Q |
1 |
catatattattgagtataatctaaggcaactttaaaagtattgataacaaattttataatgtgaaagaatcatgatatctataattcatgtataagtgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
33990852 |
catatattattgagtataatctaaggcaactttaaaagtattgataacaaattttataatgtgcaagaatcatgatatctattattcatgtaaaagtgca |
33990753 |
T |
|
| Q |
101 |
tatttagaaacaaagtgaatttgacaaaattatggtggcagtgtaannnnnnncaagttactttgataatgtctaacacaccgctaatccaaacatgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33990752 |
tatttagaaacaaagtgaatttgacaaaattatggtggcagtgtaatttttttcaagtttctttgattatgtctaacacaccgctaatccaaacatgcat |
33990653 |
T |
|
| Q |
201 |
gagagagccaaagaggatttatga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33990652 |
gagagagccaaagaggatttatga |
33990629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 33951300 - 33951226
Alignment:
| Q |
72 |
atgatatctataattcatgtataagtgcatatttagaaacaaagtgaatttgacaaaattatggtggcagtgtaa |
146 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||| |||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
33951300 |
atgatatatataattcatgtataagttcatgtttagaatcaaattgaatttggcaaaattatggtggcagcgtaa |
33951226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 33973895 - 33973821
Alignment:
| Q |
72 |
atgatatctataattcatgtataagtgcatatttagaaacaaagtgaatttgacaaaattatggtggcagtgtaa |
146 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||| |||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
33973895 |
atgatatatataattcatgtataagttcatgtttagaatcaaattgaatttggcaaaattatggtggcagcgtaa |
33973821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 33951199 - 33951144
Alignment:
| Q |
170 |
tgtctaacacaccgctaatccaaacatgcatgaga-gagccaaagaggatttatga |
224 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
33951199 |
tgtctaacacactgctaatccaaacatgcatgagataaggcaaaaaggatttatga |
33951144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 33973794 - 33973739
Alignment:
| Q |
170 |
tgtctaacacaccgctaatccaaacatgcatgaga-gagccaaagaggatttatga |
224 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
33973794 |
tgtctaacacactgctaatccaaacatgcatgagataaggcaaaaaggatttatga |
33973739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 8278802 - 8278852
Alignment:
| Q |
172 |
tctaacacaccgctaatccaaacatgcatgagagagccaaagaggatttat |
222 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8278802 |
tctaacacactgctaatccaaacatgcatgagagagccaaagaggatttat |
8278852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University