View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_102 (Length: 223)
Name: NF17903_low_102
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_102 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 4392336 - 4392517
Alignment:
| Q |
25 |
ggaaatgtgttaaaagaaagagacaaattgttcagatcacaaacactccacaccnnnnnnnnnnnctttctttctaagtgatgaaagccctagcattaac |
124 |
Q |
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| T |
4392336 |
ggaaatgtgttaaaagaaagagacaaattgttcagatcacacacactccacacctttttt------tttctttctaagtgatgaaagccctagcattaac |
4392429 |
T |
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| Q |
125 |
accnnnnnnnnctctgccatctctgcaccaacaagattcctaattaagtccccagcatgtattcttttccttgttccctttgcttctc |
212 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4392430 |
accttttttttctctgccatctctgcaccaacaagattcctaattaagtccccagcatgtattcttttccttgttccctttgcttctc |
4392517 |
T |
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