View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_107 (Length: 212)

Name: NF17903_low_107
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_107
NF17903_low_107
[»] chr7 (7 HSPs)
chr7 (18-199)||(44572192-44572377)
chr7 (101-157)||(45215792-45215848)
chr7 (136-193)||(22291130-22291187)
chr7 (118-175)||(27616664-27616721)
chr7 (101-174)||(10678642-10678715)
chr7 (101-148)||(22291192-22291239)
chr7 (137-176)||(46014552-46014591)
[»] chr2 (10 HSPs)
chr2 (101-193)||(26576384-26576476)
chr2 (101-193)||(13039199-13039291)
chr2 (101-176)||(4747819-4747894)
chr2 (123-192)||(9929974-9930043)
chr2 (101-148)||(32200612-32200659)
chr2 (139-193)||(34409369-34409423)
chr2 (101-176)||(15989806-15989881)
chr2 (101-148)||(17651633-17651680)
chr2 (101-174)||(38783517-38783590)
chr2 (101-148)||(41849371-41849418)
[»] chr4 (14 HSPs)
chr4 (108-193)||(54305941-54306026)
chr4 (101-193)||(3420116-3420208)
chr4 (101-170)||(7762757-7762826)
chr4 (136-193)||(55681002-55681059)
chr4 (137-193)||(40288939-40288995)
chr4 (145-193)||(45612230-45612278)
chr4 (101-148)||(55681064-55681111)
chr4 (136-176)||(658249-658289)
chr4 (138-174)||(44508013-44508049)
chr4 (103-158)||(29988025-29988080)
chr4 (101-160)||(31734744-31734803)
chr4 (136-174)||(2641477-2641515)
chr4 (139-193)||(32595271-32595325)
chr4 (101-149)||(35530449-35530497)
[»] chr6 (11 HSPs)
chr6 (101-193)||(12844225-12844317)
chr6 (101-193)||(19294650-19294742)
chr6 (136-193)||(34013802-34013859)
chr6 (136-193)||(34010991-34011048)
chr6 (140-193)||(14494226-14494279)
chr6 (101-148)||(34010939-34010986)
chr6 (101-147)||(34013865-34013911)
chr6 (102-176)||(2602413-2602487)
chr6 (136-187)||(17540340-17540392)
chr6 (101-148)||(14494170-14494217)
chr6 (139-175)||(17261926-17261962)
[»] chr1 (6 HSPs)
chr1 (101-176)||(48632325-48632400)
chr1 (114-179)||(23432216-23432281)
chr1 (138-193)||(32741165-32741220)
chr1 (139-176)||(23636311-23636348)
chr1 (137-193)||(16426748-16426803)
chr1 (147-193)||(3387963-3388009)
[»] chr3 (5 HSPs)
chr3 (101-176)||(25092128-25092203)
chr3 (101-148)||(43921668-43921715)
chr3 (112-174)||(10515917-10515979)
chr3 (144-193)||(30121065-30121114)
chr3 (136-176)||(43921720-43921760)
[»] scaffold0325 (1 HSPs)
scaffold0325 (101-169)||(13058-13126)
[»] chr8 (7 HSPs)
chr8 (137-193)||(18393349-18393405)
chr8 (125-176)||(13097771-13097822)
chr8 (101-148)||(15131736-15131783)
chr8 (101-175)||(2874850-2874924)
chr8 (101-172)||(15850204-15850275)
chr8 (101-170)||(14469736-14469805)
chr8 (136-193)||(37855330-37855387)
[»] chr5 (3 HSPs)
chr5 (124-174)||(32676409-32676459)
chr5 (101-158)||(40838267-40838324)
chr5 (102-142)||(41815339-41815379)
[»] scaffold1723 (1 HSPs)
scaffold1723 (101-193)||(142-231)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 44572192 - 44572377
Alignment:
Q  18 aaatggaatgcatgcgtttgcagtatgtatgtgaaagtttttgagtaatgcatttttgagttgggtggtcctgaactgaaagga----tgaagcacggac 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  44572192 aaatggaatgcatgcgtttgtagtatgtatgtgaaagtttttgagtaatgcatttttgagttgggtggtcctgaactgaaaggaactatgaagcacggac 44572291  T
Q  114 acctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaatacttatt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44572292 acctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaatacttatt 44572377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 45215792 - 45215848
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgac 157  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  45215792 atgaagcacggacacctccaggactaggcgtgtcgcggtgtccgacactcctatgac 45215848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 22291187 - 22291130
Alignment:
Q  136 cggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  22291187 cggtgtccgacactcctatgacacccgtaccacacgtgttgaaccggtgtcctaaata 22291130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 27616721 - 27616664
Alignment:
Q  118 ctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtc 175  Q
    |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||    
T  27616721 ctacgactaggcatgtcgtggtgtccgacactcatatgacactcgtacgacacgtgtc 27616664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 10678715 - 10678642
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgt 174  Q
    |||||||||| ||||||||| |||||  ||||||||||||||||| |||||||| | ||| || ||||||||||    
T  10678715 atgaagcacgaacacctctaggactaaccgtgtcgcggtgtccgatactcctataatacttgtccgacacgtgt 10678642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 22291239 - 22291192
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 148  Q
    |||||||||||| ||||||| |||||||| |||||| |||||||||||    
T  22291239 atgaagcacggaaacctctaggactaggcatgtcgcagtgtccgacac 22291192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 176
Target Start/End: Complemental strand, 46014591 - 46014552
Alignment:
Q  137 ggtgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  46014591 ggtgtccgaaactcctatgacactcgtacgacatgtgtcg 46014552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 26576476 - 26576384
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  26576476 atgaagcacggacacctctaggactagacgtgtcgcggtgtccgacactcctatgacacccgtacgacacgtgtcgaaccggtgtcttaaata 26576384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 13039291 - 13039199
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||||||||||| || |||||||||||||||||||||| |||||| |||||  | |||||||||| |||||| |||||||| ||||||    
T  13039291 atgaagcacggacacctataggactaggcgtgtcgcggtgtccaacactcatatgaaccccgtacgacacatgtcgatccggtgtcttaaata 13039199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 4747819 - 4747894
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||| || ||||||    
T  4747819 atgaagcacggacacctctaggactaggcgtgtcgtggtgtccgacaatcctatgacacttgtacggcatgtgtcg 4747894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 9930043 - 9929974
Alignment:
Q  123 actaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaat 192  Q
    ||||||| ||| || |||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  9930043 actaggcatgtggctgtgtccgacactcctatgacactcgtacgaaacgtgtcaaaacggtgtcctaaat 9929974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 32200612 - 32200659
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 148  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  32200612 atgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacac 32200659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 34409369 - 34409423
Alignment:
Q  139 tgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  34409369 tgtccgacactcctatgatacccgtacgacacgtgtcaaaccggtgtcctaaata 34409423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 15989806 - 15989881
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    |||||||||| ||||||||  |||||| ||||| || |||||| ||||||||||||||||| |||||||| |||||    
T  15989806 atgaagcacgaacacctcttggactagacgtgttgcagtgtccaacactcctatgacactcttacgacacatgtcg 15989881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 17651680 - 17651633
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 148  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||    
T  17651680 atgaagcacggacacctttaggattaggcgtgtcgcggtgtccgacac 17651633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 38783517 - 38783590
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgt 174  Q
    |||||||||  |||||||||  | |||||||||| || ||||||||||||||||||||| |||| |||| ||||    
T  38783517 atgaagcacaaacacctctaaaattaggcgtgtcacgatgtccgacactcctatgacacccgtatgacatgtgt 38783590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 41849418 - 41849371
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 148  Q
    ||||||||||||||||||||  | |||||||||||||||||| |||||    
T  41849418 atgaagcacggacacctctagaattaggcgtgtcgcggtgtcagacac 41849371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 54306026 - 54305941
Alignment:
Q  108 acggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  54306026 acggacacctctaggactaggcgtgtcacggtgtccgacactcctatgacacccgtacgacacgtgtcgaaccgatgtcctaaata 54305941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 3420208 - 3420116
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  3420208 atgaagcacggacacctctaagactaggcgtgttgcggtgtctgacactcttatgacaatcgtacgacacgtgtcgaatcggtgtcctaaata 3420116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 7762757 - 7762826
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacac 170  Q
    |||||||||||||||||||| || ||||||| | |||||||| ||||||||||||||||||||| |||||    
T  7762757 atgaagcacggacacctctaggattaggcgtatagcggtgtctgacactcctatgacactcgtatgacac 7762826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 55681059 - 55681002
Alignment:
Q  136 cggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  55681059 cggtgtccgacactcctatgacacttgtacgacacatgtcgaaccgctgtcctaaata 55681002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 40288939 - 40288995
Alignment:
Q  137 ggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||||||| |||||||    
T  40288939 ggtgtccgacattcctataacactcgtacgatacgtgtcgaaccggtgttctaaata 40288995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 45612230 - 45612278
Alignment:
Q  145 acactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  45612230 acactcctatgacacccgtacgacacgtgtcaaaccggtgtcctaaata 45612278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 55681111 - 55681064
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 148  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  55681111 atgaagcacggacacctcgaggactaggcgtgtcgcggtgtccgacac 55681064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 658249 - 658289
Alignment:
Q  136 cggtgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  658249 cggtgtccgacacttctatgacacttgtacgacacgtgtcg 658289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 44508049 - 44508013
Alignment:
Q  138 gtgtccgacactcctatgacactcgtacgacacgtgt 174  Q
    ||||| |||||||||||||||||||||||||||||||    
T  44508049 gtgtctgacactcctatgacactcgtacgacacgtgt 44508013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 29988080 - 29988025
Alignment:
Q  103 gaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgaca 158  Q
    ||||||||||||||||||  ||||||||||||| |||||  ||| |||||||||||    
T  29988080 gaagcacggacacctctagaactaggcgtgtcgtggtgtttgacgctcctatgaca 29988025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 31734803 - 31734744
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacact 160  Q
    |||||||||||| |||| || || ||| |||||| ||||||||||||||| |||||||||    
T  31734803 atgaagcacggaaacctttaggattagccgtgtcacggtgtccgacactcttatgacact 31734744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 2641515 - 2641477
Alignment:
Q  136 cggtgtccgacactcctatgacactcgtacgacacgtgt 174  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  2641515 cggtgtcggacactccaatgacactcgtacgacacgtgt 2641477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 32595325 - 32595271
Alignment:
Q  139 tgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||||| | ||||||||||||||||||||||| |||  ||||| ||||||    
T  32595325 tgtccgacacttcaatgacactcgtacgacacgtgtccaacaagtgtcttaaata 32595271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 35530497 - 35530449
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacact 149  Q
    ||||||||||||||||| || || ||||||||||  |||||||||||||    
T  35530497 atgaagcacggacacctttaggattaggcgtgtcatggtgtccgacact 35530449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 12844317 - 12844225
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  12844317 atgaagcacggacacctctagaactaggcatgtcgcggtgtccgacactcctataacacctgtacgacacgtgtcgaaccggtgtcctaaata 12844225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 19294742 - 19294650
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||| |||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  19294742 atgaagcaccgacacctctaggattaggcgtgtcgcggtgtccgacactcctgtgacacccgtacgacacgtgtcgaaccggtgtccaaaata 19294650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 34013859 - 34013802
Alignment:
Q  136 cggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  34013859 cggtgtccgacactccaatgacacttgtacgacacgtgtcgaaccggtgtcctaaata 34013802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 34010991 - 34011048
Alignment:
Q  136 cggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  34010991 cggtgtccgacactccaatgacacttgtgcgacacgtgtcgaaccggtgtcctaaata 34011048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 14494226 - 14494279
Alignment:
Q  140 gtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  14494226 gtccgacactcctatgacacccgtacgacacgtgtcgaaccagtgtcttaaata 14494279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 34010939 - 34010986
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 148  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  34010939 atgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgacac 34010986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 34013911 - 34013865
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgaca 147  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||    
T  34013911 atgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgaca 34013865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 2602487 - 2602413
Alignment:
Q  102 tgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    |||| ||| ||||||| || || || ||||||||| |||||||||||| ||||||||| | ||||||||||||||    
T  2602487 tgaaacacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcg 2602413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 17540392 - 17540340
Alignment:
Q  136 cggtgtccgacactcctatgaca-ctcgtacgacacgtgtcgaaccggtgtcc 187  Q
    ||||||||||||||||||||||| | ||||| ||||| |||||||||||||||    
T  17540392 cggtgtccgacactcctatgacaccgcgtacaacacgagtcgaaccggtgtcc 17540340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 14494170 - 14494217
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 148  Q
    |||||||||||||||||||| |||||| |||||| |||| ||||||||    
T  14494170 atgaagcacggacacctctaggactagacgtgtcacggtatccgacac 14494217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 17261962 - 17261926
Alignment:
Q  139 tgtccgacactcctatgacactcgtacgacacgtgtc 175  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  17261962 tgtccaacactcctacgacactcgtacgacacgtgtc 17261926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 48632325 - 48632400
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  48632325 atgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacactcccatgacactcgtatgacacgcgtcg 48632400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 23432281 - 23432216
Alignment:
Q  114 acctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaac 179  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| | || |||||||||||||||    
T  23432281 acctctaggactagccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaac 23432216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 32741220 - 32741165
Alignment:
Q  138 gtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  32741220 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccagcgtcctaaata 32741165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 23636348 - 23636311
Alignment:
Q  139 tgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    |||||||||||||||||||||||||| |||||||||||    
T  23636348 tgtccgacactcctatgacactcgtaagacacgtgtcg 23636311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 16426803 - 16426748
Alignment:
Q  137 ggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||||||||||||||||| |||||||||||| |||||||||  ||||| ||||||    
T  16426803 ggtgtccgacactcctatga-actcgtacgacatgtgtcgaacaagtgtcataaata 16426748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 3388009 - 3387963
Alignment:
Q  147 actcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||||||||||||||||||||||||||| ||  ||||| ||||||    
T  3388009 actcctatgacactcgtacgacacgtgtcggactagtgtcttaaata 3387963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 25092128 - 25092203
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    |||||||||||||||||||| ||||||| ||||||| ||||| |||||| ||||||||||||||| ||||||||||    
T  25092128 atgaagcacggacacctctaggactaggtgtgtcgcagtgtctgacacttctatgacactcgtacaacacgtgtcg 25092203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 43921668 - 43921715
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 148  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||||    
T  43921668 atgaagcacggacacctctaggactagccgtgtcacggtgtccgacac 43921715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 10515917 - 10515979
Alignment:
Q  112 acacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgt 174  Q
    ||||||||| |||||| ||| ||||||||||||| |||||||||||||| || ||| ||||||    
T  10515917 acacctctatgactagtcgtatcgcggtgtccgagactcctatgacacttgtccgatacgtgt 10515979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 30121114 - 30121065
Alignment:
Q  144 gacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||||||| || |||||||||||||||| | || |||||||||||    
T  30121114 gacactcctatgatacccgtacgacacgtgtcggatcgatgtcctaaata 30121065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 43921720 - 43921760
Alignment:
Q  136 cggtgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    ||||||||||||||||||||||||| ||  |||||||||||    
T  43921720 cggtgtccgacactcctatgacacttgtctgacacgtgtcg 43921760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 13126 - 13058
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgaca 169  Q
    |||||||| ||||||| ||| |||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  13126 atgaagcatggacacccctaggactaggcgtgtcgcgatgtccgatactccgatgacactcgtacgaca 13058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 18393349 - 18393405
Alignment:
Q  137 ggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  18393349 ggtgttcgacactcctatgacactcgtacgacacgtgtcgaactagtgtcctaaata 18393405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 13097822 - 13097771
Alignment:
Q  125 taggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcg 176  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  13097822 taggcgtgtcgcggtgtccgacactcatatgacactcgtacgacacgagtcg 13097771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 15131736 - 15131783
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 148  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  15131736 atgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacac 15131783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 2874850 - 2874924
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtc 175  Q
    |||||||||||||||||||| || || || ||||||||| |||||||| |||||||||||| ||| |||||||||    
T  2874850 atgaagcacggacacctctaggattacgcatgtcgcggtctccgacacgcctatgacactcatacaacacgtgtc 2874924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 15850204 - 15850275
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgt 172  Q
    |||||||||||||||||||   || || ||| |  |||||||||||||||||||||||||||||||||||||    
T  15850204 atgaagcacggacacctcttgaaccagccgtattacggtgtccgacactcctatgacactcgtacgacacgt 15850275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 14469736 - 14469805
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacac 170  Q
    |||||||| |||||||||||  |||||| |||||| |||||||||||||||| |||||||| | ||||||    
T  14469736 atgaagcatggacacctctagcactaggtgtgtcgtggtgtccgacactcctttgacactcatgcgacac 14469805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 37855387 - 37855330
Alignment:
Q  136 cggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    |||||| |||||||||||||||| |||| ||||||||||| ||||| |||||||||||    
T  37855387 cggtgttcgacactcctatgacattcgtgcgacacgtgtcaaaccgttgtcctaaata 37855330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 32676409 - 32676459
Alignment:
Q  124 ctaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgt 174  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  32676409 ctaggtgtgtcgccgtgtccgacactcctatgacacttgtacgacacgtgt 32676459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 40838324 - 40838267
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgaca 158  Q
    ||||||||||||||| |||| | | || |||||||||||||||||||||| |||||||    
T  40838324 atgaagcacggacacttctaggtcaagccgtgtcgcggtgtccgacactcgtatgaca 40838267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 41815339 - 41815379
Alignment:
Q  102 tgaagcacggacacctctacgactaggcgtgtcgcggtgtc 142  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  41815339 tgaagcacggacacctctaggactaggcatgtcacggtgtc 41815379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 142 - 231
Alignment:
Q  101 atgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 193  Q
    ||||||||||||||||| || || |||||||||| | |||||    |||||||||| |||||||||||| |||||| ||  ||||||||||||    
T  142 atgaagcacggacacctatatgattaggcgtgtcccagtgtca---actcctatgagactcgtacgacatgtgtcggacaagtgtcctaaata 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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