View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_109 (Length: 201)
Name: NF17903_low_109
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_109 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 7883439 - 7883608
Alignment:
| Q |
16 |
gaataagatcacaaacaattattcacataaatataaagttcaatatcaatactctaaatgaatcaattcttgtttcaggatttatgggagctatgatatc |
115 |
Q |
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| T |
7883439 |
gaataagatcacaaacaattattcacataaatataaagttcaatatcaatactctaaatgaatcaattcttgtttcaggatttatgggagctatgatatc |
7883538 |
T |
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| Q |
116 |
aaatttggcatttgtatttaggaatatattctcaaagaaaggaatgaatggaatgagtgttagtggaatg |
185 |
Q |
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| T |
7883539 |
aaatttggcatttgtatttaggaatatattctcaaagaaaggaatgaatggaatgagtgttagtggaatg |
7883608 |
T |
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Target: chr4 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 54985998 - 54986097
Alignment:
| Q |
86 |
tgtttcaggatttatgggagctatgatatcaaatttggcatttgtatttaggaatatattctcaaagaaaggaatgaatggaatgagtgttagtggaatg |
185 |
Q |
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| T |
54985998 |
tgtttcagggtttatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatg |
54986097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 18396534 - 18396575
Alignment:
| Q |
89 |
ttcaggatttatgggagctatgatatcaaatttggcatttgt |
130 |
Q |
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| T |
18396534 |
ttcaggttttatgggggctatgatatcaaatctggcatttgt |
18396575 |
T |
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