View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17903_low_11 (Length: 560)
Name: NF17903_low_11
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Original strand, 18603426 - 18603950
Alignment:
| Q |
16 |
atgaaaatacaagcaaaatcaagcctcgctttgtccaccgtacaatcatcggcccaaatgaatcttccatacttcgaaacacataatatgaaaaacaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18603426 |
atgaaaatacaagcaaaatcaagcctcgctttgtccac-gtacaatcatcggcccgaatgaatcttccatacttcgaaacacataatatgaaaaacaatt |
18603524 |
T |
|
| Q |
116 |
cattccatgcatgaacgggagtactatacacatggatccatgctccctgttcataccatgcatcttttgatgaccatttatgcaaatcagagaataacat |
215 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18603525 |
cattccatgcatgaacaggagtaccatacacacggatccatgctccctgttcataccatgcatcttttgatgaccatttatgcaaataagagaataacat |
18603624 |
T |
|
| Q |
216 |
actaaagaagtcgatagcatatcgaccttgccggaacaatgaagaaacattttatcaccaccaataggcgtaaccaccacattgtg-aaacccgcatcga |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18603625 |
actaaagaagtcgatagcatatcgaccttgctggaacaatgaagaaacattttatcaccaccaataggcgtaaccaccacattgtgaaaacccgcatcga |
18603724 |
T |
|
| Q |
315 |
caactctttgttgtacatctaacgaagaataccccgccaccactgtcgctactaattctgcagatgcctgtgtctgatcctcagtgactgtttgatacaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
18603725 |
caactctttgttgtacatctaacgaagaataccccgccaccattgtcgctactaatcctgcagatgcctatgtcagatcctcagtaactgtttgatacaa |
18603824 |
T |
|
| Q |
415 |
aagtttttgatgtcggtccgggagaacagacttagtttgcgctattgcctccttcattgccttcagactttcgacagtttcgctctattcttcacgttca |
514 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
18603825 |
aagtttttgatgccggtccgggtgaacagacttagtttgcgccattgcctccttcattgccttcaaactttcgacagtttcgctctattcttcacattca |
18603924 |
T |
|
| Q |
515 |
aaatccttacaaaaccgtagacctac |
540 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
18603925 |
aaaaccttacaaaaccgtagacctac |
18603950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 5960996 - 5961123
Alignment:
| Q |
28 |
gcaaaatcaagcctcgctttgtccaccgtacaatcatcggcccaaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcat |
127 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| ||| ||||||| ||||| | | | | |||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
5960996 |
gcaaaatcaagcctcgccttatccaccgtacaattgtcgacccaaataaatctgctacattctgaaacacataatttgaaaaacgattcgttccatgcat |
5961095 |
T |
|
| Q |
128 |
gaacgggagtactatacacatggatcca |
155 |
Q |
| |
|
||| |||||||| ||||||| ||||||| |
|
|
| T |
5961096 |
gaatgggagtaccatacacaaggatcca |
5961123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 19661684 - 19661776
Alignment:
| Q |
47 |
tgtccaccgtacaatcatcggcccaaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcatgaacgggagtac |
139 |
Q |
| |
|
||||||||||||||||||| | | || |||||||| || ||||||||| | | ||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19661684 |
tgtccaccgtacaatcatccgaacggatatatcttccacaccccgaaacacaaattttgaaaaacaattcattccatgcatgcacaggagtac |
19661776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University