View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_13 (Length: 549)
Name: NF17903_low_13
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 40422020 - 40421600
Alignment:
| Q |
17 |
ggtttaactcatacaaatgagttgtaacaaatgcattattatcatcgatatgataatataaatttgagataatataagctagaatcttagaaataatctt |
116 |
Q |
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| T |
40422020 |
ggtttaactcatacaaatgagttgtaacaaatgcattattatcacctatatgataatataaatttgagataatataagctagaatcttagaaataatctt |
40421921 |
T |
|
| Q |
117 |
gaatttgaagttagccattgc---aggtttgaattagctaattgtatcaccttttaaagtttttgggatgagaatcaaattgttagaattcaagtttggt |
213 |
Q |
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| T |
40421920 |
gaatttgaagttagccattgcagtaggtctgaattggctaattgtatcaccatttaaagtttttgggatgagaaccaaattgttggaatttaagtttggt |
40421821 |
T |
|
| Q |
214 |
agtaaccaatttattaccg-----ctgataatataaattatctttaatatatttattatgattttaatgtcatattaagttaagactgagtgtttaatgt |
308 |
Q |
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| T |
40421820 |
agtaaccaatttattaccgttgatatgataatataaattatctttaatatgtttattatgattttaatgtcatattaagttaagatcgagtgtttaatgt |
40421721 |
T |
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| Q |
309 |
tataataagcttaaggatatgagnnnnnnnnnnctttc-tcgagagattgatatttctatgaatttttatacaaataattatcgagaaaatagacaaata |
407 |
Q |
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| T |
40421720 |
tataataagcttaaggatatgagttttt------tttcttcgagagattgatatttctatgaatttttatataaataattgtcgagaaaatagacaaata |
40421627 |
T |
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| Q |
408 |
tatagtactatatatcatgtagtgatg |
434 |
Q |
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| T |
40421626 |
tatagtactatatatcatgtagtgatg |
40421600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 40419800 - 40419432
Alignment:
| Q |
17 |
ggtttaactcatacaaatgagttgtaacaaatgcattattatcatcgatatgataatataaatttgagataatataagctagaatcttagaaataatctt |
116 |
Q |
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||||||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40419800 |
ggtttaactcatacacataagttgtaataaatgcattattatcaccgatatgataatataaatttgagataatataagcaagaatcttagaaataatctt |
40419701 |
T |
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| Q |
117 |
gaatttgaagttagccattgca---ggtttgaattagctaattgtatcaccttttaaagtttttgggatgagaatcaaattgttagaattcaagtttggt |
213 |
Q |
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||||||||||||| ||||| | ||| |||||| ||||||||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
40419700 |
gaatttgaagttaaacattgtaatcggtctgaattggctaattgtgtcaccatttaaagtttttgggatgagaaccaatttgttagaattcaagtttggt |
40419601 |
T |
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| Q |
214 |
agtaaccaatttattaccgc-----tgataatataaattatctttaatatatttattatgattttaatgtcatattaagttaagactgagtgtttaatg- |
307 |
Q |
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| T |
40419600 |
agtaacaaatttattaccgctgatatgataatataaattatctttaatatgtttattatgattttaatgtcatattaagttaagactgagtgtttaatgt |
40419501 |
T |
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| Q |
308 |
ttataataagcttaaggatatgagnnnnnnnnnnctttctcgagagattgatatttctatgaatttttatacaaataat |
386 |
Q |
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| T |
40419500 |
ttataataagcttaaggatatgagt----------ttttacgagaaattgatatttctatgaatttttatacaaataat |
40419432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 40422143 - 40422082
Alignment:
| Q |
20 |
ttaactcatacaaatgagttgtaacaaatgcattattatcatcgatatgataatataaattt |
81 |
Q |
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| T |
40422143 |
ttaactcatacaaatgagttgtaacaaatgcattattatcactgatatgataatattaattt |
40422082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 492 - 538
Target Start/End: Complemental strand, 40419164 - 40419118
Alignment:
| Q |
492 |
ccattgtatagttacaacgtagttgatgtgtgtagatacgagttcat |
538 |
Q |
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| T |
40419164 |
ccattgtatagttaaaacgtagttgatgtgtgtggatacgagttcat |
40419118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 492 - 538
Target Start/End: Complemental strand, 40421541 - 40421495
Alignment:
| Q |
492 |
ccattgtatagttacaacgtagttgatgtgtgtagatacgagttcat |
538 |
Q |
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| T |
40421541 |
ccattgtataattacaacgtagttgatgtgtgtagatatgagttcat |
40421495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 40419270 - 40419225
Alignment:
| Q |
389 |
tcgagaaaatagacaaatatatagtactatatatcatgtagtgatg |
434 |
Q |
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| T |
40419270 |
tcgagaaaataaaaaaatatatagtactatatatcatgtagtgatg |
40419225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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