View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17903_low_15 (Length: 509)
Name: NF17903_low_15
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_15 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 34355531 - 34355035
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355531 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
34355432 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34355431 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
34355332 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
34355331 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaggttttcttttccttgttccttaaatccttccggttggagcatctaaatttc |
34355232 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34355231 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgataatagta |
34355132 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355131 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
34355035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 41721931 - 41721435
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721931 |
atcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
41721832 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41721831 |
tcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgctgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
41721732 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41721731 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttggagcatataaatttc |
41721632 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721631 |
ttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgccaacactactctgatagtagta |
41721532 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721531 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
41721435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 48698617 - 48699113
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698617 |
atcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
48698716 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48698717 |
tcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
48698816 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48698817 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttggagcatataaatttc |
48698916 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698917 |
ttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgccaacactactctgatagtagta |
48699016 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699017 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
48699113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 42269424 - 42268928
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269424 |
atcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
42269325 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42269324 |
tcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgctgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
42269225 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42269224 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttggagcatataaatttc |
42269125 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269124 |
ttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgccaacactactctgatagtagta |
42269025 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42269024 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagccttgcacgataccgttccacttgat |
42268928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 30946979 - 30947475
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30946979 |
atcgaactccctagccaactgtgccttcaattcctggactcgatctttattggggcctaccaccaatatgtcatccacatacaacagcaaaatgataaaa |
30947078 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30947079 |
tcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
30947178 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
30947179 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttgaagcatataaatttc |
30947278 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
30947279 |
ttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaatgcagcacacattgccaacactactctaatagtagta |
30947378 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947379 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
30947475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 2002404 - 2001902
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| | |||| || |||||||||| | |||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
2002404 |
atcgaactccctagccaattgtgcctttaattcttagacttgatctttgttgggtcctaccaccaacatgtcatccacaaacaacaacaaaatgataaaa |
2002305 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| | ||||||| |||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
2002304 |
tcattattaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtatccaaggctaactatgaaagaatcaaatctcttgtaccaacatc |
2002205 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagca------tata |
294 |
Q |
| |
|
| ||||||| ||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||| |||| |
|
|
| T |
2002204 |
taggcgcctattttagactgtacatagaattggtcaacctgcaaaccaagttttcctttccttgttcttcaaaaccttctggttggagcatatatatata |
2002105 |
T |
|
| Q |
295 |
aatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgata |
394 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||||| | |||||||||| |||||| || ||||||||||| ||||| |||| |||||| |
|
|
| T |
2002104 |
tatttcttcttcaagctctccgtgaagaaaagcagtttttacatctaattgttcaagatataaatcaaacgcagcacacatagccaaaactattctgatg |
2002005 |
T |
|
| Q |
395 |
gtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccactt |
494 |
Q |
| |
|
||||| ||||| ||||| || || ||||| |||||||| ||||||| ||||||||||||||| ||||| || |||| |||||||||||| ||||| |||| |
|
|
| T |
2002004 |
gtagtgagtctaacaactggggagaatatttcattgaaatcaatacattctttctgagcataccctttaaccaccaatcttgcacgatatcgttctactt |
2001905 |
T |
|
| Q |
495 |
gat |
497 |
Q |
| |
|
||| |
|
|
| T |
2001904 |
gat |
2001902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 28608722 - 28608804
Alignment:
| Q |
269 |
ttaaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaag |
351 |
Q |
| |
|
||||||||||| ||||| | ||| || || ||||| || | |||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
28608722 |
ttaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatccatttgttcaag |
28608804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 14177111 - 14177071
Alignment:
| Q |
311 |
tctccatgaagaaaagcagtctttacatccagctgttcaag |
351 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
14177111 |
tctccatgaagaaatgcagtctttacatccatttgttcaag |
14177071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 5820071 - 5820567
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820071 |
atcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
5820170 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5820171 |
tcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
5820270 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5820271 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttggagcatataaatttc |
5820370 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820371 |
ttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgccaacactactctgatagtagta |
5820470 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820471 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
5820567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 42588469 - 42587973
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||| |||||| || |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42588469 |
atcgaactccctagccaattgtgcatttaattcttggacttgatctttgttgggtcctaccaccaacatgtcatccacatacaacaacaaaatgataaaa |
42588370 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| | ||||||| |||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
42588369 |
tcattattaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtatccaaggctaactatgaaagaatcaaatctcttgtaccaacatc |
42588270 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||| ||||| |
|
|
| T |
42588269 |
taggcgcctgttttagaccgtatagagatttggtcaacctgcaaaccaagttttcctttccttgttcttcaaaaccttctggttggagcatatatatttc |
42588170 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||| |||||||||||||||| ||| |||||||| | ||||||||||||||||| || ||| ||||||| || || |||| ||||||||| || |
|
|
| T |
42588169 |
ttcttcaagctctccatgaagaaaagaagtttttacatctaattgttcaagatgtaaatcaaacgcaacacacatagctaaaactattctgatagttgtg |
42588070 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
||||| ||||| || || ||||| | |||||| || ||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| ||||||| |
|
|
| T |
42588069 |
agtctaacaactggggagaatattttattgaaatctataccttctttttgagcataccctttaaccaccagtcttgcacgatatcgttctacttgat |
42587973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 54544666 - 54544598
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacat |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| ||| |||||||||||| |||||||||||| |
|
|
| T |
54544666 |
atcgaactccctagccaactgtgccttcaattcttagacccgatctttgttggggcctaccaccaacat |
54544598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 829000 - 828504
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829000 |
atcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
828901 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
828900 |
tcattatcatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
828801 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
828800 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttggagcatataaatttc |
828701 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828700 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
828601 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
828600 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgattccgttccacttgat |
828504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 13841709 - 13842061
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||| | |||||||| | || || |||||||| ||||| | |||||||||| | ||||||||| ||||| |||| | |||||| ||||||||||||| |
|
|
| T |
13841709 |
atcgaacacactagccaattttgtctgcaattcctcgactcaatctttgttgggtcctaccaccaatatgtcgtccatacacaacaacaaaatgataaaa |
13841808 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
|| || ||| ||| |||| |||||||||||||| || |||| ||||||||||||| ||||||||||| ||||||| |||| ||||||| || ||| |
|
|
| T |
13841809 |
tcgttatcataaaaaaatttgcagtacgtacaatggcctaaactcagtctgttgtaatgaaggctaattatcaaagaattaaatatcttgtagcaacata |
13841908 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
||| | |||||||| ||||||| |||||| |||||||| ||||| |||||||||||||||| |||||| ||| ||| ||||||||||||||||| || |
|
|
| T |
13841909 |
tggacacctgctttcagccgtacaaagatttagtcaacctacaaactaagttttcttttccttcttctttggatctttctggttggagcatataaatgtc |
13842008 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagat |
353 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
13842009 |
ttcttcaatttcaccatgaaaaaaagcagtctttacatctagttgttcaagat |
13842061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 507
Target Start/End: Original strand, 13842065 - 13842158
Alignment:
| Q |
414 |
gagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgatgatgtccatc |
507 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| ||||||||| |||| || |||||||||||| ||| |||||||| || |||||| |
|
|
| T |
13842065 |
gagaaaatatctcattgaaatcaatacctcttttctgagtatatcctttgacaatcaatcttgcacgatatcgtctcacttgatcatttccatc |
13842158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 17455350 - 17455389
Alignment:
| Q |
298 |
ttcttcttcaagttctccatgaagaaaagcagtctttaca |
337 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17455350 |
ttcttcttcaagttctccatgaacaaaagcagtctttaca |
17455389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 9440887 - 9441383
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440887 |
atcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
9440986 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9440987 |
tcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgctgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
9441086 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9441087 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttggagcatataaatttc |
9441186 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
9441187 |
ttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgaagcacacatcgccaacactactctgatagtagta |
9441286 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9441287 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagccttgcacgataccgttccacttgat |
9441383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 4 - 489
Target Start/End: Original strand, 24595290 - 24595775
Alignment:
| Q |
4 |
gaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaatca |
103 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||| || |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24595290 |
gaactctctagccaattgtgcctttaattcttggacttgatctttgttgggtcctaccaccaacatgtcatccacatacaacaacaaaatgataaaatca |
24595389 |
T |
|
| Q |
104 |
ttgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatctgg |
203 |
Q |
| |
|
|| | ||||||| |||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
24595390 |
ttattaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtatccaaggctaactatgaaagaatcaaatctcttgtaccaacatctag |
24595489 |
T |
|
| Q |
204 |
gcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttcttc |
303 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||| |||||||| |
|
|
| T |
24595490 |
gcgcctgttttagaccgtacagagatttggtcaacttgcaaaccaagttttcctttccttgttcttcaaaaccttctggttggagcatatatatttcttc |
24595589 |
T |
|
| Q |
304 |
ttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagtaagt |
403 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| | ||||||||||||||||| || ||| ||||||| ||||| |||| ||||||||| || ||| |
|
|
| T |
24595590 |
ttcaagctctccatgaagaaaagcagtttttacatctaattgttcaagatgtaaatcaaacgcaacacacatagccaaaactattctgatagttgtgagt |
24595689 |
T |
|
| Q |
404 |
ctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttc |
489 |
Q |
| |
|
|| ||||| || || ||||| |||||||| || |||| ||||||||||||||| ||||| || ||||||||||||||||| ||||| |
|
|
| T |
24595690 |
ctaacaactggggagaatatttcattgaaatctatactttctttctgagcataccctttaaccaccagtcttgcacgatatcgttc |
24595775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 12933841 - 12933801
Alignment:
| Q |
311 |
tctccatgaagaaaagcagtctttacatccagctgttcaag |
351 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
12933841 |
tctccatgaagaaatgcagtctttacatccatttgttcaag |
12933801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 26977689 - 26978182
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977689 |
atcgaactccctagccaactgtgccttcaattcttggacccgatctttgttggggcctaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
26977788 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26977789 |
tcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
26977888 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26977889 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttggagcatataaatttc |
26977988 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26977989 |
ttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgccaacactactttgatagtagta |
26978088 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccactt |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26978089 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccactt |
26978182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 27875505 - 27876001
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27875505 |
atcgaactccctagccaactgtgccttcaattcttggactcgatcttttttggggcctaccaccaatatgtcatccacatacaacagcaaaatgataaaa |
27875604 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27875605 |
tcattaccatcaaaccttttgtagtacgttcaatggtcttaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccaacatc |
27875704 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27875705 |
tgggcgcctgctttagactttacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttggagcatataaatttc |
27875804 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875805 |
ttcttcaagttctccatgaagaaaaacagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
27875904 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27875905 |
agtctgacaaccgtagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgattccgttccacttgat |
27876001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 82 - 483
Target Start/End: Original strand, 18148080 - 18148482
Alignment:
| Q |
82 |
caacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatca |
181 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| |||||| || ||| | ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
18148080 |
caacagcaaaatgataaaatcattaccataaaaccttttgtagtatgtacaacagtgagaaattagtttgttgtaatcgaaactaattatgaaagaatca |
18148179 |
T |
|
| Q |
182 |
aatctcttgtaccagcatctgggcgcct-gctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttcc |
280 |
Q |
| |
|
| | |||||||||| | | ||||||||| | |||| ||| |||| |||||| || |||||||||||||| ||||||||| ||| || ||||||| ||| | |
|
|
| T |
18148180 |
attgtcttgtaccaacctatgggcgccttgatttaaaccatacatagatttagttaacctgcaaaccaatttttcttttgcttattatttaaatgctttc |
18148279 |
T |
|
| Q |
281 |
ggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgcca |
380 |
Q |
| |
|
| |||||||| || ||||||||||||||| |||| | | |||||| || |||||||||| | || |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
18148280 |
gattggagcacatgaatttcttcttcaagctctctaggtagaaaaacactctttacatctaactattcaagatgtaaatccaatgcaacacacattgcca |
18148379 |
T |
|
| Q |
381 |
acactactctg-atagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcac |
479 |
Q |
| |
|
||| ||| ||| || ||||| ||||| ||||||||||||||||||||||| ||||||| ||||||| ||| || |||||||||| |||| |||||||||| |
|
|
| T |
18148380 |
acattac-ctgtattgtagtgagtctaacaaccggagaaaatatctcattaaagtcaacaccttctgtctaagaatatccttttgcaactagtcttgcac |
18148478 |
T |
|
| Q |
480 |
gata |
483 |
Q |
| |
|
|||| |
|
|
| T |
18148479 |
gata |
18148482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 21964914 - 21964817
Alignment:
| Q |
4 |
gaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaat |
101 |
Q |
| |
|
||||||||||||||||| || |||||||| || ||| | |||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
21964914 |
gaactccctagccaactatgtattcaattcatgaactaggtctttgttggggcctaccaccaacatgtaatccacatacaacagtaaagtgataaaat |
21964817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 1473264 - 1473327
Alignment:
| Q |
5 |
aactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaaca |
68 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| |||||| || |||||||||| | ||||||||||| |
|
|
| T |
1473264 |
aactccctggccaattgtgcctttaattcttggacttgatctttgttgggtcctaccaccaaca |
1473327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 21964786 - 21964702
Alignment:
| Q |
213 |
ttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatt |
298 |
Q |
| |
|
|||||||||| | ||||||||||||| | ||||||| ||||| |||| |||||| |||||| ||| |||||||| ||||||||| |
|
|
| T |
21964786 |
ttagaccgtataaagatttggtcaacttacaaaccagattttcctttcattgttccttaaat-cttttggttggaggatataaatt |
21964702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 7506372 - 7506802
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||| |||||| || |||||||||| | ||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
7506372 |
atcgaactccctagccaattatgcctttaattcttggacttgatctttgttgggtcctaccaccaacatgtcatccacatacaataacaaaatgataaaa |
7506471 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
||||| || ||||||| |||||||| ||||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7506472 |
tcattatcaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtattcaaggctaactatgaaagaatcaaatctcttgtaccaacatc |
7506571 |
T |
|
| Q |
201 |
tgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttctttaaatccttccggttggagcatataaatttc |
300 |
Q |
| |
|
| ||||| || ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||| |||| ||||||||| ||||| |
|
|
| T |
7506572 |
taggcgcatgttttagaccgtacaaagatttggtcaacatgcaaaccaagttttcctttccttgttcttcaaaaccttctggtt-gagcatatatatttc |
7506670 |
T |
|
| Q |
301 |
ttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacactactctgatagtagta |
400 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||| | ||||||||||||||||| || ||||||||||| ||||| |||| |||||| ||| | |
|
|
| T |
7506671 |
ttcttcaagctgtccatgaagaaaagcagtttttacatctaattgttcaagatgtaaatcaaacgcagcacacatagccaaaactattctgatggtaatg |
7506770 |
T |
|
| Q |
401 |
agtctgacaaccggagaaaatatctcattgaa |
432 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| |
|
|
| T |
7506771 |
agtctaacaactggggagaatatttcattgaa |
7506802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 507
Target Start/End: Original strand, 2324789 - 2324896
Alignment:
| Q |
399 |
taagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgatg |
498 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| | || ||||| |||||||||||||||||||| |
|
|
| T |
2324789 |
taagtctgacaaccgga-aaaatatctcatcaaagtcaataccttctttctgagtatatccttttaccatcaatcttgaacgataccgttccacttgatc |
2324887 |
T |
|
| Q |
499 |
atgtccatc |
507 |
Q |
| |
|
|| |||||| |
|
|
| T |
2324888 |
atttccatc |
2324896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 183; Significance: 9e-99; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 28831 - 29045
Alignment:
| Q |
1 |
atcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcttaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28831 |
atcgaactccctagccaattgtgccttcaattcccggactcgacctttgttgggtcctaccaccaacatgtcatccacatacaacagcaaaatgataaaa |
28930 |
T |
|
| Q |
101 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaatctcttgtaccagcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
28931 |
tcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaattgaggctaattatgaaagaatcaaatctcttgcaccaacatc |
29030 |
T |
|
| Q |
201 |
tgggcgcctgcttta |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29031 |
tgggcgcctgcttta |
29045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 166 - 497
Target Start/End: Complemental strand, 34972738 - 34972411
Alignment:
| Q |
166 |
aattatgaaagaatcaaatctcttgtaccagcatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttctttt-ccttg |
264 |
Q |
| |
|
||||| |||||||||||||||| ||||||| ||| |||| || || |||||| |||||| ||||| |||||||| ||||||||||||| |||| |||| |
|
|
| T |
34972738 |
aattacgaaagaatcaaatctcatgtaccaacatttgggtgcatgttttagatcgtacatagattcagtcaacctacaaaccaagttttttttttccttc |
34972639 |
T |
|
| Q |
265 |
ttctttaaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaat |
364 |
Q |
| |
|
|||||| ||||||||| ||| || ||||||||||| | |||||| ||||||||||||||| || ||||| |||| || |||||||||||||||| |||| |
|
|
| T |
34972638 |
ttctttgaatccttccagttatagtatataaatttccttttcaagctctccatgaagaaaaacactctttgcatctagatgttcaagatgtaaatacaat |
34972539 |
T |
|
| Q |
365 |
gcagcacacatcgccaacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatcctttta |
464 |
Q |
| |
|
||| ||||||| ||| |||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
34972538 |
gcaacacacatagccgccactactctgatagtagtaagtctaacaactg-----aataatacattgaagtcaataccttctttatgagcatatactttta |
34972444 |
T |
|
| Q |
465 |
caaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
| | ||||||||| |||| |||||||||||| |
|
|
| T |
34972443 |
ccagtagtcttgcatgatattgttccacttgat |
34972411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 497
Target Start/End: Original strand, 11926865 - 11926920
Alignment:
| Q |
442 |
ttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
497 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||| ||||||| |||||||||||| |
|
|
| T |
11926865 |
ttctttctgagcatattattttaccaccggtcttggacgatacggttccacttgat |
11926920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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