View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_17 (Length: 501)
Name: NF17903_low_17
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 28734515 - 28734017
Alignment:
| Q |
1 |
aacatgaaaataaagttataacaagaacataatcttacttgaattttgcatgttttaaaatgagcaatcatgctgttatttcccttaattttaatggaag |
100 |
Q |
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| T |
28734515 |
aacatgaaaataaagttataacaagaacataatcttacttgaattttgcatgttttaaaatgagcaatcatgctgttatttcccttaattttaatggaag |
28734416 |
T |
|
| Q |
101 |
aacaagataatgtaaaa--------------cagaaagaacaaaatgtgatcaaaacaatgtatcttcaaaacatttgtgacactactttgttaaggcaa |
186 |
Q |
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| T |
28734415 |
aacaagataatgtaaaaaaaaaaatgtaaaacaggaagagcaaaatgtgatcaaaacaatgtatcttcaaaacatttgtgacactactttgttaaggcaa |
28734316 |
T |
|
| Q |
187 |
atattctccaaggattgtttgaatggtgatcaaaccagaggatgcccaacatataataatataaagcaaacaagtacaatcaaacatgagttaaagcatt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28734315 |
atattctccaaggattgtttgaatggtgatcaaaccagaggatgcccaacatataataatataaagcaaacaagtacaatcaaacatgagttaaagcatt |
28734216 |
T |
|
| Q |
287 |
tactcaacatggtaactaacaagaatgtaaagaagcatattatacatagttacgcaaccttgcatatatctatctattgatgattcttcttccacaacac |
386 |
Q |
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| T |
28734215 |
tactcaacatggtaattaacaagaacgtaaagaagcatattatacatagttacgcaaccttgcatatatctatctattgatgattcttcttccacaacac |
28734116 |
T |
|
| Q |
387 |
tccaatcttcttcaacatggttgtatttttcttcttaggtgagtcatcatcagtttcttccgaataaggtgaactcatcttgttaccaatagtagaatt |
485 |
Q |
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| T |
28734115 |
tccaatcttcttcaacatggttgtatttttcttcttaggtgagtcatcatcagtttcttctgaataaggtgaactcatcttgttaccaatagtagaatt |
28734017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 464
Target Start/End: Complemental strand, 22111065 - 22110965
Alignment:
| Q |
364 |
tgatgattcttcttccacaacactccaatcttcttcaacatggttgtatttttcttcttaggtgagtcatcatcagtttcttccgaataaggtgaactca |
463 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |||| || | ||||||||||| || || |||||||| || ||||| |||| |||||| ||| |
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| T |
22111065 |
tgatgattcttcctccacaacactccaatcttcttcagcatgtttttgtttttcttctttggggactcatcatccgtgtcttctaaatagggtgaattca |
22110966 |
T |
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| Q |
464 |
t |
464 |
Q |
| |
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| |
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| T |
22110965 |
t |
22110965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 464
Target Start/End: Original strand, 40583524 - 40583624
Alignment:
| Q |
364 |
tgatgattcttcttccacaacactccaatcttcttcaacatggttgtatttttcttcttaggtgagtcatcatcagtttcttccgaataaggtgaactca |
463 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||| || | ||||||||||| || || |||||||| || ||||| |||| |||||| ||| |
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| T |
40583524 |
tgatgattcttcctccacaacactccaatcttcttcagcatgtttttgtttttcttctttggggactcatcatccgtgtcttctaaatagggtgaattca |
40583623 |
T |
|
| Q |
464 |
t |
464 |
Q |
| |
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| |
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|
| T |
40583624 |
t |
40583624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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