View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_19 (Length: 481)
Name: NF17903_low_19
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Complemental strand, 27053853 - 27053406
Alignment:
| Q |
20 |
cacttagcgccaccgatgctgcagcttttgaaaagcacgctgccgccaacacattatccacaaagttgccggaattctgctctgccgcacacctcttctg |
119 |
Q |
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| T |
27053853 |
cacttagcgccaccgatgctgcagcttttgaaaagcacgctgccgccaacacattatccacaaagttgccggaattctgctctgccgcacatctcttctg |
27053754 |
T |
|
| Q |
120 |
cttcccgaacataaatccacaactttgtcgtaaacccattctcagaggattaggaaccaacattttcaaaggatatggtaaaggagttgatttagataac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27053753 |
cttcccgaacataaatccacaactttgtcgtaaacccgttctcagaggattaggaaccaacattttcaaaggatatggtaaaggagttgatttagataac |
27053654 |
T |
|
| Q |
220 |
aagtttagcttcgacaattacggttttactaaccctttcaaagattacgccaaaagaggtatttcattcggcatctacactaaatcttcttcaactaact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27053653 |
aagtttagcttcgacaattacggttttactaaccctttcaaagattacgccaaaagaggtatttcattcggcatctacactaaatcttcttcaactaact |
27053554 |
T |
|
| Q |
320 |
ccgttaccagtttggtggttgaaccaggtaagtttttccgcgaaacgatgttgaaggaagggactgttatgcctatgccagatataagggataagttacc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27053553 |
ccgttaccagtttggtggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttacc |
27053454 |
T |
|
| Q |
420 |
acctaggtcgtttttgccccgttccattttgatcaaattgccctttgc |
467 |
Q |
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| T |
27053453 |
acctaggtcgtttttgccacgttccattttgatcaaattgccctttgc |
27053406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 27065980 - 27065848
Alignment:
| Q |
335 |
tggttgaaccaggtaagtttttccgcgaaacgatgttgaaggaagggactgttatgcctatgccagatataagggataagttaccacctaggtcgttttt |
434 |
Q |
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||||| |||| |||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| |
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| T |
27065980 |
tggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
27065881 |
T |
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| Q |
435 |
gccccgttccattttgatcaaattgccctttgc |
467 |
Q |
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||| ||||||||||||| ||||||||| ||||| |
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| T |
27065880 |
gcctcgttccattttgaccaaattgccatttgc |
27065848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 467
Target Start/End: Complemental strand, 27079696 - 27079565
Alignment:
| Q |
336 |
ggttgaaccaggtaagtttttccgcgaaacgatgttgaaggaagggactgttatgcctatgccagatataagggataagttaccacctaggtcgtttttg |
435 |
Q |
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|||| |||| |||||||||||||| |||| ||||||||| ||||| |||||||||||||| ||||| | |||||| ||||| || ||||||||||| |
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| T |
27079696 |
ggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccgccaaggtcgttttta |
27079597 |
T |
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| Q |
436 |
ccccgttccattttgatcaaattgccctttgc |
467 |
Q |
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|| ||| ||||||||| |||||| |||||||| |
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| T |
27079596 |
ccacgtaccattttgaccaaattaccctttgc |
27079565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 27067007 - 27066936
Alignment:
| Q |
55 |
cacgctgccgccaacacattatccacaaagttgccggaattctgctctgccgcacacctcttctgcttcccg |
126 |
Q |
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||||| |||||||||||| | ||||||||| |||||||||||||||| ||||| || ||||||||||||||| |
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| T |
27067007 |
cacgcggccgccaacacactctccacaaagctgccggaattctgctccgccgcccatctcttctgcttcccg |
27066936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 27080726 - 27080645
Alignment:
| Q |
20 |
cacttagcgccaccgatgctgcagcttttgaaaagcacgctgccgccaacacattatccacaaagttgccggaattctgctc |
101 |
Q |
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|||| ||||||||||| | || ||||||| || ||||| || ||||||||| | ||||||||||||||||| |||||||| |
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| T |
27080726 |
cactcagcgccaccgagaccgcggcttttgcgaaacacgcggcagccaacacactctccacaaagttgccggagttctgctc |
27080645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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