View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_2 (Length: 1097)

Name: NF17903_low_2
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_2
NF17903_low_2
[»] chr7 (4 HSPs)
chr7 (50-681)||(36943921-36944552)
chr7 (695-916)||(36943613-36943848)
chr7 (1025-1097)||(36943432-36943504)
chr7 (1049-1086)||(34235587-34235624)
[»] chr8 (3 HSPs)
chr8 (1045-1086)||(6387588-6387629)
chr8 (1040-1071)||(32587535-32587566)
chr8 (1048-1087)||(39455658-39455697)
[»] chr1 (1 HSPs)
chr1 (1048-1084)||(13114784-13114820)
[»] scaffold0095 (1 HSPs)
scaffold0095 (1048-1087)||(14043-14082)
[»] chr4 (2 HSPs)
chr4 (1044-1087)||(40662036-40662079)
chr4 (1048-1086)||(20454570-20454608)
[»] chr5 (1 HSPs)
chr5 (1049-1087)||(16875376-16875414)
[»] chr3 (5 HSPs)
chr3 (1038-1088)||(33164940-33164990)
chr3 (1044-1086)||(37926557-37926599)
chr3 (1048-1086)||(41707551-41707589)
chr3 (1048-1085)||(27243075-27243112)
chr3 (1048-1085)||(50661635-50661672)


Alignment Details
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 50 - 681
Target Start/End: Complemental strand, 36944552 - 36943921
Alignment:
Q  50 atgtctcataccctctttgagtcagtaacaaatgttaaagttaaaaagaaagtgaagcattgtcccaccaggaaaagaaatggcaacaagaaacacatgt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36944552 atgtctcataccctctttgagtcagtaacaaatgttaaagttaaaaagaaagtgaagcattgtcccaccaggaaaagaaatggcaacaagaaacacatgt 36944453  T
Q  150 attaaccatcttgagaaagaataattatatattatcaatgtggataaaaaataagagtggtaacaaacatgagtgaagaaaaatcaatggcaacacggaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36944452 attaaccatcttgagaaagaataattatatattatcaatgtggataaaaaacaagagtggtaacaaacatgagtgaagaaaaatcaatggcaacacggaa 36944353  T
Q  250 ctgagattgcattgcacatgaatgcgctcaatatgcgtttatcnnnnnnnaaccttttattactattctgagaatcttgttgttaaagttgcattctact 349  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36944352 ctgagattgcattgcacatgaatgcgctcaatatgcgtttatctttttttaaccttttattactattctgagaatcttgttgttaaagttacattctact 36944253  T
Q  350 tttaggataaatatatactatgcaattttctagtaatttttctgaccccccatattgcaagtcgcagtggcaagcaatggaacagaaaattttaatctat 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36944252 tttaggataaatatatactatgcaattttctagtaatttttctgaccccccatattgcaagtcgcagtggcaagcaatggaacagaaatttttaatctat 36944153  T
Q  450 attatattttcttttgggaaagattcgattgtctgtatataattatcttaaggtgtgtggttaaagttattttatcttgattcctttatgaaaattttag 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36944152 attatattttcttttgggaaagattcgattgtctgtatataattatcttaaggtgtgtggttaaagttattttatcttgattcctttatgaaaattttag 36944053  T
Q  550 cagacctattgtgtctgaatttatgccagaatctttataatatttaattactacattgcatatgctcacaatgtcctaacaattgttccggacatggcta 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36944052 cagacctattgtgtctgaatttatgccagaatctttataatatttaattactacattgcgtatgctcacaatgtcctaacaattgttccggacatggcta 36943953  T
Q  650 agacccgctatacgaatgaattcgatcataga 681  Q
    ||||||||||||||||||||||||||||||||    
T  36943952 agacccgctatacgaatgaattcgatcataga 36943921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 695 - 916
Target Start/End: Complemental strand, 36943848 - 36943613
Alignment:
Q  695 tagaaggcgatccaaaaatcacgccggatatccttc---------aacggaatttcactctatccttctgaaattctacctgtaaatggacgtatgcaca 785  Q
    ||||||||||||||||||||||||| ||||||||||         ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  36943848 tagaaggcgatccaaaaatcacgccagatatccttcgacgaactcaacggaatttcactccatccttttgaaattctacctgtaaatggacgtatgcaca 36943749  T
Q  786 tgagaaagataataacacttttatccaaaaaatctcacacgtgcctcaatcacaaaattacctcaacgttgaagtgtttgcaaatagaacaactctg--- 882  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||       
T  36943748 tgagaaaggtagtaacacttttatcca-aaaatctcacacgtgcctcattcacaaaattagctcagcgttgaagtgtttgcaaatagaacaactctgacg 36943650  T
Q  883 ---agtctagatccacttcagatcaacaatattaccc 916  Q
       | |||||||| |||||| ||||||||||||||||    
T  36943649 gtcaatctagatctacttcatatcaacaatattaccc 36943613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1025 - 1097
Target Start/End: Complemental strand, 36943504 - 36943432
Alignment:
Q  1025 caaaaagatgagatatatgaacactctctaacactcactctcttattagataaaatcaatgtgaaagaatgaa 1097  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36943504 caaaaagaggagatatatgaacactctctaacactcactctcttattagataaaatcaatgtgaaagaatgaa 36943432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1049 - 1086
Target Start/End: Original strand, 34235587 - 34235624
Alignment:
Q  1049 tctctaacactcactctcttattagataaaatcaatgt 1086  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  34235587 tctctaacactcactttcttattagataaaatcaatgt 34235624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1045 - 1086
Target Start/End: Original strand, 6387588 - 6387629
Alignment:
Q  1045 acactctctaacactcactctcttattagataaaatcaatgt 1086  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  6387588 acactctctaacactcactcttttattggataaaatcaatgt 6387629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1040 - 1071
Target Start/End: Original strand, 32587535 - 32587566
Alignment:
Q  1040 tatgaacactctctaacactcactctcttatt 1071  Q
    ||||||||||||||||||||||||||||||||    
T  32587535 tatgaacactctctaacactcactctcttatt 32587566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1048 - 1087
Target Start/End: Complemental strand, 39455697 - 39455658
Alignment:
Q  1048 ctctctaacactcactctcttattagataaaatcaatgtg 1087  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  39455697 ctctctaacacccactctcttattaggtaaaatcaatgtg 39455658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1048 - 1084
Target Start/End: Complemental strand, 13114820 - 13114784
Alignment:
Q  1048 ctctctaacactcactctcttattagataaaatcaat 1084  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13114820 ctctctaacactcactcttttattagataaaatcaat 13114784  T

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Target: scaffold0095 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1048 - 1087
Target Start/End: Original strand, 14043 - 14082
Alignment:
Q  1048 ctctctaacactcactctcttattagataaaatcaatgtg 1087  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  14043 ctctctaacacccactctcttattaggtaaaatcaatgtg 14082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1044 - 1087
Target Start/End: Complemental strand, 40662079 - 40662036
Alignment:
Q  1044 aacactctctaacactcactctcttattagataaaatcaatgtg 1087  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||    
T  40662079 aacactctctaacattcactctcttattggataaaattaatgtg 40662036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1048 - 1086
Target Start/End: Original strand, 20454570 - 20454608
Alignment:
Q  1048 ctctctaacactcactctcttattagataaaatcaatgt 1086  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  20454570 ctctctagcactcactcttttattagataaaatcaatgt 20454608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1049 - 1087
Target Start/End: Complemental strand, 16875414 - 16875376
Alignment:
Q  1049 tctctaacactcactctcttattagataaaatcaatgtg 1087  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  16875414 tctctaacactcactctcttattgggtaaaatcaatgtg 16875376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1038 - 1088
Target Start/End: Complemental strand, 33164990 - 33164940
Alignment:
Q  1038 tatatgaacactctctaacactcactctcttattagataaaatcaatgtga 1088  Q
    |||| |||| || ||||||||||||||||||||| ||| ||||||||||||    
T  33164990 tataggaactctttctaacactcactctcttattggattaaatcaatgtga 33164940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1044 - 1086
Target Start/End: Original strand, 37926557 - 37926599
Alignment:
Q  1044 aacactctctaacactcactctcttattagataaaatcaatgt 1086  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  37926557 aacactctctaacactcactttcttattaggtgaaatcaatgt 37926599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1048 - 1086
Target Start/End: Complemental strand, 41707589 - 41707551
Alignment:
Q  1048 ctctctaacactcactctcttattagataaaatcaatgt 1086  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  41707589 ctctctaacactcactctctcattggataaaatcaatgt 41707551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1048 - 1085
Target Start/End: Original strand, 27243075 - 27243112
Alignment:
Q  1048 ctctctaacactcactctcttattagataaaatcaatg 1085  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  27243075 ctctctaacactcactcttttattggataaaatcaatg 27243112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1048 - 1085
Target Start/End: Complemental strand, 50661672 - 50661635
Alignment:
Q  1048 ctctctaacactcactctcttattagataaaatcaatg 1085  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  50661672 ctctctaacacttactcttttattagataaaatcaatg 50661635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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