View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_21 (Length: 474)

Name: NF17903_low_21
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_21
NF17903_low_21
[»] chr7 (3 HSPs)
chr7 (1-155)||(39273512-39273666)
chr7 (334-453)||(39273776-39273895)
chr7 (288-452)||(44118108-44118274)
[»] chr2 (3 HSPs)
chr2 (290-456)||(26441809-26441975)
chr2 (287-384)||(32281390-32281485)
chr2 (288-371)||(7826046-7826130)
[»] chr5 (1 HSPs)
chr5 (287-456)||(34505489-34505658)
[»] chr3 (2 HSPs)
chr3 (288-456)||(37220343-37220511)
chr3 (304-360)||(2213231-2213287)
[»] chr1 (1 HSPs)
chr1 (289-456)||(47935707-47935875)
[»] scaffold1028 (1 HSPs)
scaffold1028 (290-456)||(1840-2006)
[»] chr4 (3 HSPs)
chr4 (290-396)||(14862349-14862455)
chr4 (290-378)||(30176150-30176240)
chr4 (387-428)||(30176264-30176305)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 39273512 - 39273666
Alignment:
Q  1 aaaggaagtaaaatccgccttcgatattggagaagtaagagtcatgtaaactactttattctctcatgcatgaatggataggaaaggaaaacccacctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39273512 aaaggaagtaaaatccgccttcgatattggagaagtaagagtcatgtaaactactttattctctcatgcatgaatggataggaaaggaaaacccacctaa 39273611  T
Q  101 ttagatattatctttgattttaagaggagtagatgaaagtggtggtgttgaacct 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39273612 ttagatattatctttgattttaagaggagtagatgaaagtggtggtgttgaacct 39273666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 334 - 453
Target Start/End: Original strand, 39273776 - 39273895
Alignment:
Q  334 gattaaaatacaatagaatataacacataatatatgtacatgttgataaatagttccaagccaatcttatatagtagcaaatacaattaagcataatatg 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| || |||||||||||||    
T  39273776 gattaaaatacaatagaatataacacataatatatgtacatgttgataaatagttccaagtcgatcttatatagtagtaaataaaactaagcataatatg 39273875  T
Q  434 aaaatacaattaatgaaaat 453  Q
    ||||||||||||||||||||    
T  39273876 aaaatacaattaatgaaaat 39273895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 452
Target Start/End: Complemental strand, 44118274 - 44118108
Alignment:
Q  288 taactagatcccctgcccgtgctggcgcacgggcatttataatgtagattaaaatacaatagaatataacacataatatatgtacatgttgat-aaatag 386  Q
    |||||||||||||| ||||||||| |||||||| ||||| | | | |||||||||  |  | ||| |||||||||| |||| ||||||||| | ||||||    
T  44118274 taactagatcccctacccgtgctgtcgcacgggtatttaaattttggattaaaattgagaataatgtaacacataacatatttacatgttggtaaaatag 44118175  T
Q  387 ttccaagccaatcttatatagtagcaaatacaattaagcataat-atgaaaatacaattaatgaaaa 452  Q
    || |||| |||| |||||||||| ||||   ||||||| | ||| |||| |||||||| ||||||||    
T  44118174 ttgcaagacaatattatatagtaacaaaagaaattaagaacaataatgagaatacaatgaatgaaaa 44118108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 26441809 - 26441975
Alignment:
Q  290 actagatcccctgcccgtgctggcgcacgggcatttataatgtagattaaaatacaatagaatataacacataatatatgtacatgttgataaatagttc 389  Q
    |||||||||||| ||| |||||  |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26441809 actagatcccctacccatgctgatgcacggacatttatagtgtggattaaaatacaatagaatataacacataatatatgtacatgttgataaatagttc 26441908  T
Q  390 caagccaatcttatatagtagcaaatacaattaagcataatatgaaaatacaattaatgaaaatgtt 456  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  26441909 caagtcaatcttatatagtaacaaataaaattaagcataatatgaaaatacaattaatgaaaatgtt 26441975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 287 - 384
Target Start/End: Complemental strand, 32281485 - 32281390
Alignment:
Q  287 ataactagatcccctgcccgtgctggcgcacgggcatttataatgtagattaaaatacaatagaatataacacataatatatgtacatgttgataaat 384  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||||| |||| ||| | | |||||||||||||  |||||||||||||||||||||||    
T  32281485 ataactagatcccccacccgtgctgacgcacgggcatttacaatgtggatttaaacatagtagaatataacac--aatatatgtacatgttgataaat 32281390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 7826046 - 7826130
Alignment:
Q  288 taactagatcccctgcccgtgctggcgcacggg-catttataatgtagattaaaatacaatagaatataacacataatatatgta 371  Q
    |||||||||||||  ||||||||| |||||||| |||||||| |||  | ||||||| | |||||||||||| ||||||| ||||    
T  7826046 taactagatcccccacccgtgctgtcgcacgggtcatttatagtgtgtaataaaataaagtagaatataacatataatatttgta 7826130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 287 - 456
Target Start/End: Original strand, 34505489 - 34505658
Alignment:
Q  287 ataactagatcccctgcccgtgctggcgcacgggcatttataatgtagattaaaatacaatagaatataacacataatatatgtacatgttgataaatag 386  Q
    ||||||||||||||  ||||||||| |||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  34505489 ataactagatccccaacccgtgctgacgcacgggcatttatagtgtggattaaaatataatagattataacacataatatatgtacatgttgataaatag 34505588  T
Q  387 ttccaagccaatcttatatagtagcaaatacaattaagcataatatgaaaatacaattaatgaaaatgtt 456  Q
    || ||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||    
T  34505589 tttcaagccagtcttatatagtaacaaataaaattaagcataatatgaaaatacaaataatgaaaatgtt 34505658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 456
Target Start/End: Original strand, 37220343 - 37220511
Alignment:
Q  288 taactagatcccctgcccgtgctggcgcacgggcatttataatgtagattaaaatacaatagaatataacacataatatatgtacatgttgataaatagt 387  Q
    ||||||||||||||  |||||| | |||||||||||||||| |||  ||||||||| | ||||||||| |||||||||||||||||||||||||||||||    
T  37220343 taactagatcccctatccgtgccgacgcacgggcatttatagtgtgaattaaaatatagtagaatatagcacataatatatgtacatgttgataaatagt 37220442  T
Q  388 tccaagccaatcttatatagtagcaaatacaattaagcataatatgaaaatacaattaatgaaaatgtt 456  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  37220443 tccaagccaatctcatatagtaacaaataaaattaagcataatatgaaaatacaattaatgaaaatgtt 37220511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 2213287 - 2213231
Alignment:
Q  304 ccgtgctggcgcacgggcatttataatgtagattaaaatacaatagaatataacaca 360  Q
    |||||||| ||||||| |||||||||||| |||||||||| | |||||| |||||||    
T  2213287 ccgtgctgacgcacggacatttataatgtggattaaaatatagtagaatttaacaca 2213231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 289 - 456
Target Start/End: Complemental strand, 47935875 - 47935707
Alignment:
Q  289 aactagatcccctgcccgtgctggcgcacgggcatttataatgtagattaaaa-tacaatagaatataacacataatatatgtacatgttgataaatagt 387  Q
    ||||||||||||| ||||||||| |||||   |||||||| ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  47935875 aactagatcccctacccgtgctgacgcacatacatttatagtgtggattaaaaatataatagaatataacacataatatatgtacatgttgataaatagt 47935776  T
Q  388 tccaagccaatcttatatagtagcaaatacaattaagcataatatgaaaatacaattaatgaaaatgtt 456  Q
    |||||| |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  47935775 tccaagtcaatctcatatagtaacaaataaaattaagcataatatgaaaatacaattaatgaaaatgtt 47935707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1028 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold1028
Description:

Target: scaffold1028; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 1840 - 2006
Alignment:
Q  290 actagatcccctgcccgtgctggcgcacgggcatttataatgtagattaaaatacaatagaatataacacataatatatgtacatgttgataaatagttc 389  Q
    |||||||||||| ||||||||  || | || |||||||| ||| |||||||||| | ||||||||||||||||||||||||||| |||||||||||||||    
T  1840 actagatcccctacccgtgctaacgaa-ggacatttatagtgtggattaaaatatagtagaatataacacataatatatgtacacgttgataaatagttc 1938  T
Q  390 caagccaatcttatatag-tagcaaatacaattaagcataatatgaaaatacaattaatgaaaatgtt 456  Q
    ||| ||| |||||||||| |  |||||| ||||||| |||||||||||||||||||||||||||||||    
T  1939 caaaccagtcttatatagtttccaaataaaattaagtataatatgaaaatacaattaatgaaaatgtt 2006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 14862349 - 14862455
Alignment:
Q  290 actagatcccctgcccgtgctggcgcacgggcatttataatgtagattaaaatacaatagaatataacacataatatatgtacatgttgataaatagttc 389  Q
    ||||||||||||  |||| ||| ||||||| |||||||| |||  ||||||||| | |||||||||  ||||||||||||||||||| |||||||||||     
T  14862349 actagatcccctatccgtactgacgcacggacatttatagtgtgaattaaaatatagtagaatatataacataatatatgtacatgtcgataaatagttt 14862448  T
Q  390 caagcca 396  Q
    |||||||    
T  14862449 caagcca 14862455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 378
Target Start/End: Original strand, 30176150 - 30176240
Alignment:
Q  290 actagatcccctgcccgtgctggcgcacggg-catttataatgtagatta-aaatacaatagaatataacacataatatatgtacatgttg 378  Q
    |||||||| ||| ||||||||| ||||| || |||||||| |||  |||| ||||| ||||||||||||||||||||||||||||||||||    
T  30176150 actagatctccttcccgtgctgacgcacaggtcatttatagtgtgcattagaaatataatagaatataacacataatatatgtacatgttg 30176240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 30176264 - 30176305
Alignment:
Q  387 ttccaagccaatcttatatagtagcaaatacaattaagcata 428  Q
    |||||||||| |||||||||||| |||||| |||||||||||    
T  30176264 ttccaagccattcttatatagtatcaaataaaattaagcata 30176305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University