View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_22 (Length: 469)
Name: NF17903_low_22
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Complemental strand, 35465278 - 35464831
Alignment:
| Q |
10 |
aagaatattaagcaaattgatgtacctttccccagtcaatctgaaaaggatctctaacattttgattggaaattaagaaatccaccacaggcccaggttg |
109 |
Q |
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| T |
35465278 |
aagaatattaagcaaattgatgtacctttccccagtcaatctgaaaaggatctctaacattttgattggaaattaagaaatccaccacaggcccaggttg |
35465179 |
T |
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| Q |
110 |
aattatcatggtagttgagacatctacgtaatttggaagattgcagagagttagacaacaaacaagtattgccataagagagttgaatatgggattaaga |
209 |
Q |
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| T |
35465178 |
aattatcatggtagttgagacatctacgtaatttggaagattgcagagagttagacaacaaacaagtattgccataagagagttgaatatgggattaaga |
35465079 |
T |
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| Q |
210 |
tttaacctatgttaagagagagcccgctctgtgtagctctaaaacttgaatggaatcctcgacagcctagaacaccaccccccacatcagcaaaattctt |
309 |
Q |
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| T |
35465078 |
tttaacctatgttaagagagagcccgctctgtgtagctctaaaacttgaatggaatcctcgacagcctagaacaccaccccccacatcagcaaaattctt |
35464979 |
T |
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| Q |
310 |
gggatcattgtggaagaaagattggcgcacaagtaggcagcccctgtaatagacaatgtgaagttaaatatattgaggtgttatagtgccacatacatat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35464978 |
gggatcattgtggaagaaagattggcgcacaagtaggcagcccctgtaatagacaatgtgaagttaaatatattgaggtgttatagtgccatatacatat |
35464879 |
T |
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| Q |
410 |
acgaaaaatgaaaatatgaaaaggaatttgcagaatattgaaggaatt |
457 |
Q |
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| T |
35464878 |
acgaaaaatgaaaatatgaaaaggaatttgcagaatattgaaggaatt |
35464831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 20024018 - 20024159
Alignment:
| Q |
250 |
aaaacttgaatggaatcctcgacagcctagaacaccaccccc-cacatcagcaaaattcttgggatcattgtggaagaaagattggcgcacaagtaggca |
348 |
Q |
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||||||||||| |||||| | ||||||||||||||||||| |||||||||||||| || |||||||||||||||||| | |||| |||||||||| | |
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| T |
20024018 |
aaaacttgaataagatcctccagagcctagaacaccacccccacacatcagcaaaatcatttggatcattgtggaagaaaaactggcacacaagtaggaa |
20024117 |
T |
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| Q |
349 |
gcccctgtaatagacaatgtgaagttaaatatattgaggtgtt |
391 |
Q |
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| T |
20024118 |
g-gcctgtaacagacaatgtcaagctaaaaatatagaggtgtt |
20024159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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