View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_23 (Length: 458)
Name: NF17903_low_23
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 37931578 - 37931142
Alignment:
| Q |
8 |
attattctgtcacataaactcaaattctgacctcaataaaaatattttttctacgttatctcttgatgaattggggtatctatnnnnnnnntcgtaaaat |
107 |
Q |
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| T |
37931578 |
attattttgtcacataaactcaaattctgacctcaataaagaaattttttctacgttatctcttgatgaattggggtatctataaaaaaaatcgtaaaat |
37931479 |
T |
|
| Q |
108 |
attacccaaagcatttcacaattcacactgcatgcagttttacaaatttcaacaaataatttagcttatgatgatcaacatcgtgcgtggattcgccatt |
207 |
Q |
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| T |
37931478 |
attacccaaagcatttcacaattcacactgcatgcagttttacaaatttcaacaaataatttagcttatgatgatcaacatcgtgcgtggattcgccatt |
37931379 |
T |
|
| Q |
208 |
aatttcaagtacgtgcacaacacatgactaaagtttggttagtcaatagagtcatatctcacatgcggattatgatatacacttttgagaaaataatggc |
307 |
Q |
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| T |
37931378 |
aatttcaagtacgtgcacaacacatgactaaagtttggttagtcaatagagtcatatctcacatgcggattatgatatacacttttgagaaaataatggc |
37931279 |
T |
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| Q |
308 |
agttcaaccatttttaagtctttttgttaaaatatagtttgtgatcatgattcatcaaataagacttagtttggtatgaacatgcatgtgagaannnnnn |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37931278 |
agttcaaccatttttaagtctttttgttaaaatatagtttgggatcatgattcatcaaataagacttagtttggtatgaacatgcatgtgagaatttttt |
37931179 |
T |
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| Q |
408 |
nncaaacacgtgcatgcgagtatacaacaaacaaaat |
444 |
Q |
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| T |
37931178 |
ttcaaacacgtgcatgcgagtatacaacaaacaaaat |
37931142 |
T |
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