View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_24 (Length: 444)
Name: NF17903_low_24
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 241 - 429
Target Start/End: Original strand, 46441948 - 46442136
Alignment:
| Q |
241 |
cctatcgaaacaggaaatttggaaatatcattgacaatctaatcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttgtagttcgtcg |
340 |
Q |
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| T |
46441948 |
cctatcgaaacaggaaatttggaaatatcattgacaatctaatcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttgtagttcgtcg |
46442047 |
T |
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| Q |
341 |
tgaggctgtagatatggttgatcatttccttgaccataatccaagaatgaaattctccattaatggaaaaagtgtttgggttagaaaat |
429 |
Q |
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| T |
46442048 |
tgaggctgtagatatggttgatcgtttccttgacgataatccaagaatgaaattctccattaatggaaaaagtgtttgggttagaaaat |
46442136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 46441708 - 46441878
Alignment:
| Q |
1 |
gtccggtttatgagaatgaacttagagaattttttacgaggtaccattttagatttatttatttatgtccatattcatgtacatatatcaaatttcttaa |
100 |
Q |
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| T |
46441708 |
gtccggtttatgagaatgaacttagggaattttttacgaggtaccattttagatttatttatttatgtccatattcatgtacatatatcaaatttcttaa |
46441807 |
T |
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| Q |
101 |
ttatataaaactttacttatttaattaataatcattatcacatcttacgaaagttgactctatgtgtttca |
171 |
Q |
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| T |
46441808 |
ttatataaaattttaattatttaattaataatcattatcacatcttacgaaagttgactctatgtgtttca |
46441878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 248 - 429
Target Start/End: Complemental strand, 18329767 - 18329586
Alignment:
| Q |
248 |
aaacaggaaatttggaaatatcattgacaatctaatcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttgtagttcgtcgtgaggct |
347 |
Q |
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| T |
18329767 |
aaacaggaaatttggaaatatcattgacaacctgataatgcaagaagtgaatccaccaaagcaatcattgtatgctcgtcttgttgttcgtcctgaggct |
18329668 |
T |
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| Q |
348 |
gtagatatggttgatcatttccttgaccataatccaagaatgaaattctccattaatggaaaaagtgtttgggttagaaaat |
429 |
Q |
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| T |
18329667 |
atggatgtaattgatcatttccttgactacaattcaagaatgaaattctccattaatggaaagcatgtttgggctagaaaat |
18329586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 429
Target Start/End: Original strand, 11575894 - 11576041
Alignment:
| Q |
282 |
atcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttgtagttcgtcgtgaggctgtagatatggttgatcatttccttgaccataatc |
381 |
Q |
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| T |
11575894 |
atcatgcaaaaacctaattcaccagagcagtcgatgtatgcacgtcttgtggttcgcccagaagctatagatgtgattgaccattttcttgaatataagc |
11575993 |
T |
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| Q |
382 |
caagaatgaaattctccattaatggaaaaagtgtttgggttagaaaat |
429 |
Q |
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| T |
11575994 |
caataatgaagttctccattaatgggaaacatgtttgggctagaaaat |
11576041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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