View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_25 (Length: 435)
Name: NF17903_low_25
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 40959970 - 40960299
Alignment:
| Q |
11 |
cacagaccaccctgcattggacccaatgatttgtttttcttgtattttcattgaggcatccttcttgggttaattgatcacatagggc----aaattatt |
106 |
Q |
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| T |
40959970 |
cacagaccaccctgcattggacccaatgatttgtttttcttgtattttcattgaggcatccttcttgggttaattgatcacatagggccaacaaattatt |
40960069 |
T |
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| Q |
107 |
ggaccaatattttggtggccatatgtgatcaattgatgataaaatagtactataatccatatctttggcatatgtggtcattattttctgtgatgatgat |
206 |
Q |
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| T |
40960070 |
gaaccaatattttggtggccatatgtgatcaattgatgataaaatagtactataatccatatctttggcatatgtggtcattattttctgtgatgatgat |
40960169 |
T |
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| Q |
207 |
ttgaaggtagactgtaccaattaaaagcgttggagttggtacatgataggnnnnnnnnnnnagaagcaaagaannnnnnnattgattatagactgcattg |
306 |
Q |
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| T |
40960170 |
ttgaaggtagactgtaccaattaaaagcgttggagttggtacatgatagg-ttctttttttagcagcaaagaatttttttattgattatagactgcattg |
40960268 |
T |
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| Q |
307 |
ctattaagtacaagtagtactcgaccctccc |
337 |
Q |
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| T |
40960269 |
ctattaagtacaagtagtactcgaccctccc |
40960299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 433
Target Start/End: Original strand, 40960335 - 40960395
Alignment:
| Q |
373 |
ttacctaaccatacactgtaaaccatttgtaaaagaggcgaggtggacccgaattcttccc |
433 |
Q |
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| T |
40960335 |
ttacctaagcatacaatgtaaaccattcgtaaaagaggcaaggtggacccgaattcttccc |
40960395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 22506487 - 22506429
Alignment:
| Q |
15 |
gaccaccctgcattggacccaatgatttgtttttcttgtattttcattgaggcatcctt |
73 |
Q |
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| T |
22506487 |
gaccaccctgcattggacccaatgatttaattttcttgtattttcatggaggcatcctt |
22506429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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