View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_26 (Length: 431)
Name: NF17903_low_26
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 417
Target Start/End: Original strand, 32252877 - 32253281
Alignment:
| Q |
12 |
atgaacattgatcggatttgtgaggctgtctatgtatagaatttattcttgcatcaatccacatctacaatttccaaaaagataaatatcaagccaagtg |
111 |
Q |
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| T |
32252877 |
atgaacattgatcggatttgtgaggttgtctatgtatagaatttattcttgcatcaatccacatctacaatttacaaaa-gataaatatcaaaccaagtg |
32252975 |
T |
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| Q |
112 |
tttggtaagtcaacatcaagaaattaaacatgtatcatatgtgatttatttcaagtggttaattcagttaaggacaaatcattcaggataatccaagttg |
211 |
Q |
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| T |
32252976 |
tttggtaagtcaacatcaagaaattaaacatgtatcatatgtgatttattttaagtggttaattcagttaaggacaaatcattcaggataatccaagttc |
32253075 |
T |
|
| Q |
212 |
aaattatggctagaacaatcattgactagactttacttcgctactgggtgaactctggattaccggggccagttccttacaaatcggagggttcagataa |
311 |
Q |
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| T |
32253076 |
aaattatggctagaacaatcattgactagactttacttcgctactgggtgaactctggattaccggggccagttccttacaaatcggagggttcagataa |
32253175 |
T |
|
| Q |
312 |
aaatatatcaagaaagcaaagatcaacaaataaatgcatataaacaccagtttactaagaaatgcagtttgatagaaagtttgaacttactggaatagac |
411 |
Q |
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| T |
32253176 |
aaatatatcaagaaagcaaagatcaacaaataaatgcatataaacaccagtttactaagaaatgcagtttgatagaaagtttgaacttactggaatagac |
32253275 |
T |
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| Q |
412 |
ctaaat |
417 |
Q |
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| T |
32253276 |
ctaaat |
32253281 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 11415727 - 11415636
Alignment:
| Q |
12 |
atgaacattgatcggatttgtgaggctgtctatgtatagaatttattcttgcatcaatccacatctacaatttccaaaaagataaatatcaa |
103 |
Q |
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||||| ||||||| |||| || ||| ||||| ||||| |||||| ||| ||||| |||||||||||||||| |||||| ||||||||||| |
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| T |
11415727 |
atgaatattgatcagattcgttaggttgtctgtgtatggaatttggtctagcatctgtccacatctacaatttgcaaaaatataaatatcaa |
11415636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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