View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_3 (Length: 831)

Name: NF17903_low_3
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_3
NF17903_low_3
[»] scaffold0024 (5 HSPs)
scaffold0024 (422-657)||(29163-29398)
scaffold0024 (24-155)||(64166-64298)
scaffold0024 (310-422)||(64300-64412)
scaffold0024 (652-729)||(29428-29505)
scaffold0024 (761-812)||(29566-29617)
[»] chr7 (2 HSPs)
chr7 (46-214)||(16088420-16088589)
chr7 (49-116)||(15011078-15011144)
[»] chr8 (6 HSPs)
chr8 (53-214)||(14400321-14400485)
chr8 (46-179)||(17124335-17124469)
chr8 (46-95)||(23538953-23539001)
chr8 (54-161)||(16227689-16227794)
chr8 (157-214)||(21675582-21675640)
chr8 (157-214)||(17984607-17984664)
[»] chr6 (2 HSPs)
chr6 (46-214)||(16165863-16166032)
chr6 (422-470)||(7266002-7266050)
[»] chr3 (3 HSPs)
chr3 (46-198)||(40355363-40355518)
chr3 (481-535)||(2101636-2101691)
chr3 (49-105)||(38278667-38278720)
[»] scaffold0417 (1 HSPs)
scaffold0417 (158-214)||(1793-1849)


Alignment Details
Target: scaffold0024 (Bit Score: 188; Significance: 1e-101; HSPs: 5)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 422 - 657
Target Start/End: Original strand, 29163 - 29398
Alignment:
Q  422 agtgttgtcaattatggatcacagaaaacagcggcttgttcaaatttcagtaccctacagtgctatagcgtcgttatagtcgatatttgaaaacatttgt 521  Q
    ||||||||||||| |||||| ||| ||||||| |||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||| |||||||||    
T  29163 agtgttgtcaattgtggatcgcaggaaacagcagcttgttcaaatttcagtatgctacagtgatatagcgtcgttatagttgatatttgagaacatttgt 29262  T
Q  522 actaagtagtgtatgacagagcaatattgatttgttcaatactgtccactacgctatagttccatattagctgctatttgacaatactgagtcgctggat 621  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  29263 actaagtagtgtatgacagagcaatattgatttgttcaatactgtccactacgctagagttccacattagctgcaatttgacaatactgagtcgctggat 29362  T
Q  622 gctgtttgtataataggatgaaactataggatttta 657  Q
    ||||||||||||||||||||||||||||||||||||    
T  29363 gctgtttgtataataggatgaaactataggatttta 29398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 64166 - 64298
Alignment:
Q  24 tgtatctcaacatcaacaaact-aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacatagtgaga 122  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  64166 tgtatctcaacatcaacaaacttaatctccaaagtagtcatgtcacatctaatcataatacatcatcaaaatataaaatctcaatctcaacatactgaga 64265  T
Q  123 ggtaaatctcataaatcataaacaaaataacaa 155  Q
    |||||||||||||||||||||||||||||||||    
T  64266 ggtaaatctcataaatcataaacaaaataacaa 64298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 310 - 422
Target Start/End: Original strand, 64300 - 64412
Alignment:
Q  310 catgcgtgacattttaatatcgagaaaactgaattagacatgtcagattcgtctgtttcctttccctcttcacttctgtacgtaaatctaaatttcttaa 409  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  64300 catgtgtgacattttaatatcgagaaaactgaattagacatgtcagattcgtctatttcctttccctcttcacttctgtacgtaaatctaaatttcttaa 64399  T
Q  410 tttaaaacgctta 422  Q
    |||||||||||||    
T  64400 tttaaaacgctta 64412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 652 - 729
Target Start/End: Original strand, 29428 - 29505
Alignment:
Q  652 attttattaatattggcgtgaaggatgtgttacagaagacacgacactggatgtatgttttttgttgttgttcactca 729  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  29428 attttattaatattggcgtgaaggatgtgttacagaagagacgacactgcatgcatgttttttgttgttgttcactca 29505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 761 - 812
Target Start/End: Original strand, 29566 - 29617
Alignment:
Q  761 tattgcagctggtggatggcactctactgcattgaccgatgaaggagaggtg 812  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  29566 tattgcagctggtggatggcactctactgcattgacagatgacggagaggtg 29617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 16088420 - 16088589
Alignment:
Q  46 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc-aatctcaacatagtgagaggtaaatctcataaa-tcataa 143  Q
    ||||||||||||| ||||| |||||||  || |||||||||| |||| ||   |||||| |||||||||||| |||| ||||||||||||||  ||||||    
T  16088420 aatctccaaagtatccatgccacatatc-tcgtaatacatcaccaaatta---aatctccaatctcaacatactgagtggtaaatctcataaggtcataa 16088515  T
Q  144 a-ca-aaataacaacagacagacaccctaatcagagccggacactaagactccaaaa-caagaaacgaggtagc 214  Q
    | || ||||| ||||||||||||||||||||||||||  |||||||||||||||||| ||| | ||||||||||    
T  16088516 aacataaatatcaacagacagacaccctaatcagagcgtgacactaagactccaaaatcaaaagacgaggtagc 16088589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 15011144 - 15011078
Alignment:
Q  49 ctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacata 116  Q
    ||||||| |||||||||||||| | |||||||||||||| |||| |||||| ||  ||||||||||||    
T  15011144 ctccaaaatagccatgtcacatgtcatcataatacatcaccaaagtataaactc-aaatctcaacata 15011078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 14400485 - 14400321
Alignment:
Q  53 aaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc--aatctcaacatagtgagaggtaaatctcataaa-tcataaaca--- 146  Q
    ||||||||||||||||||||  ||||||||||||| |||||||   ||||||  |||||||||| | |||| | ||||||||||||  | ||||| |       
T  14400485 aaagtagccatgtcacatatc-tcataatacatcaccaaaata---aatctccaaatctcaacaaattgagtgataaatctcataatgtgataaaaacat 14400390  T
Q  147 aaataacaacagacagacaccctaatcagagccggacactaagactccaaaac-aagaaacgaggtagc 214  Q
    ||| ||||||||||| ||| | ||||||||||| | ||||||||||||||| | |||||||||||||||    
T  14400389 aaaaaacaacagacatacatcataatcagagcccggcactaagactccaaagcaaagaaacgaggtagc 14400321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 17124335 - 17124469
Alignment:
Q  46 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc--aatctcaacatagtgagaggtaaatctcataaa-tcat- 141  Q
    ||||||||||||||||||| ||||||| ||||| |||||||| ||||||   |||||||  |||||||||| | |||| | ||||||||||||| ||||     
T  17124335 aatctccaaagtagccatgccacatat-atcatcatacatcaccaaaat---aaatctccaaatctcaacaaactgagtgataaatctcataaagtcata 17124430  T
Q  142 aaaca-aaataacaacagacagacaccctaatcagagcc 179  Q
    ||||| || |||||| ||||||||| |||||||||||||    
T  17124431 aaacataactaacaaaagacagacatcctaatcagagcc 17124469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 23538953 - 23539001
Alignment:
Q  46 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaata 95  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  23538953 aatctccaaagtagccatgtcacatat-atcataatacatcaccaaaata 23539001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 16227689 - 16227794
Alignment:
Q  54 aagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc-aatctcaacatagtgagaggtaaatctcataaa-tcataaacaaaata 151  Q
    |||||| |||| |||||||| ||||||||||||| |||||||   |||||| |||||||||||| |||| | ||||||||||||| ||||||| | |  |    
T  16227689 aagtagacatgccacatata-tcataatacatcaccaaaata---aatctccaatctcaacatactgagtgataaatctcataaagtcataaaaacataa 16227784  T
Q  152 acaacagaca 161  Q
    ||||||||||    
T  16227785 acaacagaca 16227794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 21675582 - 21675640
Alignment:
Q  157 agacagacaccctaatcagagccggacactaagactcc-aaaacaagaaacgaggtagc 214  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||| | ||||||||||    
T  21675582 agacagacaccctaatcagagtcgcacactaagactccgaaagcaaaagacgaggtagc 21675640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 17984664 - 17984607
Alignment:
Q  157 agacagacaccctaatcagagccggacactaagactccaaaacaagaaacgaggtagc 214  Q
    ||||||||| | |||||| |||| |||||| |||||||||||||| ||||||| ||||    
T  17984664 agacagacatcttaatcaaagcccgacactcagactccaaaacaaaaaacgagctagc 17984607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 16166032 - 16165863
Alignment:
Q  46 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacatagtgagaggtaaa-tctcataaa-tcataa 143  Q
    ||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||  ||  |||||||| | | || | | |||| |||||| |  ||||||    
T  16166032 aatctccaaagtagccatgccacatata-tcataatacatcaccaaaata-aatttccaaatctcaataaactgggtgataaaatctcatcatgtcataa 16165935  T
Q  144 acaaaataacaacagacagacaccctaatcagagccggacactaagactccaaaac-aagaaacgaggtagc 214  Q
    | | |  ||||| ||||| ||||||||| ||||||| ||||||||||||||||| | |||||||||||||||    
T  16165934 aaacataaacaatagacatacaccctaaacagagcccgacactaagactccaaagcaaagaaacgaggtagc 16165863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 7266002 - 7266050
Alignment:
Q  422 agtgttgtcaattatggatcacagaaaacagcggcttgttcaaatttca 470  Q
    ||||||||||||||||||||||||||||| || | || |||||||||||    
T  7266002 agtgttgtcaattatggatcacagaaaacggcagttttttcaaatttca 7266050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 198
Target Start/End: Complemental strand, 40355518 - 40355363
Alignment:
Q  46 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc-aatctcaacatagtgagagg-taaatctcataaa-tcata 142  Q
    ||||| |||||||| |||| |||||||  ||||||||||||| |||||||   |||||| |||||||||||| |||| |  ||||||||||||| |||||    
T  40355518 aatcttcaaagtagtcatgccacatatc-tcataatacatcaccaaaata---aatctccaatctcaacatattgagtgaataaatctcataaagtcata 40355423  T
Q  143 aaca--aaataacaacagacagacaccctaatcagagccgg--acactaagactccaaaa 198  Q
    ||    ||||||||||||||| ||| | ||||||||||| |  |||||||||||||||||    
T  40355422 aaatgtaaataacaacagacaaacatcataatcagagcccgacacactaagactccaaaa 40355363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 535
Target Start/End: Original strand, 2101636 - 2101691
Alignment:
Q  481 gtgctatagcgtcgttatagtcgatatttgaaaaca-tttgtactaagtagtgtat 535  Q
    |||||||||||||||||||| || ||||||| |||| |||||||||| ||||||||    
T  2101636 gtgctatagcgtcgttatagccgttatttgacaacactttgtactaaatagtgtat 2101691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 38278720 - 38278667
Alignment:
Q  49 ctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctca 105  Q
    ||||||||||||||||||||  ||||||||| ||||||| | |||||||||||||||    
T  38278720 ctccaaagtagccatgtcac--ataatcatattacatca-ccaaatataaaatctca 38278667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 1793 - 1849
Alignment:
Q  158 gacagacaccctaatcagagccggacactaagactccaaaacaagaaacgaggtagc 214  Q
    |||||||| |||||| |||||| ||||||||||||||||| ||| ||||||| ||||    
T  1793 gacagacatcctaattagagcccgacactaagactccaaagcaaaaaacgagttagc 1849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University