View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_30 (Length: 406)
Name: NF17903_low_30
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 13961403 - 13961786
Alignment:
| Q |
18 |
acaatagtggtaccagttttcaaataagaaggggatttaagacccttcttttcaagcatatcgtttcttctgcatagatcgaaactgaatccaccctttg |
117 |
Q |
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| T |
13961403 |
acaatagtggtaccagttttcaaataagaaggggatttaagacccttcttttcaagcatatcgtttcttctgcatagatcgaaactgaatccaccctttg |
13961502 |
T |
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| Q |
118 |
caggaacatccaatgatttcgtcattcttcaatttcaaatccaacctgaaaatcaacaagattataatcggaaaatcgagggtttgattaagaaactgag |
217 |
Q |
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| T |
13961503 |
gaggaacatccaatgatttcgtcattcttcaatttcaaatccaacctgaaaaccaacaagattataatcggaaaatcgagggtttgattaagaaactgag |
13961602 |
T |
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| Q |
218 |
t--agagagagagactcacaagtaatgcgatgcaatggaggaaaagaaagaggttttaactc--tgaatgtatcgtggacaagaagaaaagcaccgatta |
313 |
Q |
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| T |
13961603 |
tagagagagagagactcacgagtaatgcgatgcaatggaggaaaagaaagaggttttaactctgtgaatgtatcgtggacaagaagaaaagcaccgatta |
13961702 |
T |
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| Q |
314 |
agcgcttcttgttctacaa-tttttagtgttttcactatgattattatgcaaaagacaaaaatatccttacatttttacctatg |
396 |
Q |
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| T |
13961703 |
agcgcttcttgttctacaattttttagtgttttcattatgattattatgcaaaagacaaaaatatccttacatttttacctatg |
13961786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 11617102 - 11617199
Alignment:
| Q |
18 |
acaatagtggtaccagttttcaaataagaaggggatttaagacccttcttttcaagcatatcgtttcttctgcatagatcgaaactgaatccaccctt |
115 |
Q |
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| T |
11617102 |
acaatagtggttcctgtcttcaaataagtaggggctttaagacccttcttttcgagcatatcatttcttctgcagagatcaaaactgaacccaccctt |
11617199 |
T |
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