View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_4 (Length: 688)
Name: NF17903_low_4
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 629; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 1 - 672
Target Start/End: Original strand, 43856403 - 43857077
Alignment:
| Q |
1 |
aatgtaaataatgtattttagttcaactgtcatgtgcattgtgcggattatgtgatatttttgtctttttactgaaagtagaactcaaaattgaaaaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43856403 |
aatgtaaataatgtattttagttcgactgtcatgtgcattgtgcggattatgtgatatttttgtctttatactgaaagtagaactcaaaattgaaaaaac |
43856502 |
T |
|
| Q |
101 |
aaatgatttattttagcattaatagacacggtggaaccaaaggaaatgtacaaaccaaactgtctcattttattctttatatagttggagctgtttttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43856503 |
aaatgatttattttagcattaatagacacggtggaaccaaaggaaatgtacaaaccaaactgtctcattttattctttatatagttggagctgtttttgt |
43856602 |
T |
|
| Q |
201 |
ccttgtctacattttcactgttgtttctttttgataaatccgaggaacagacaaatgcttg---attaatgagtatatttctcacttaatagttagttct |
297 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43856603 |
ccttgtctacgttttcactattgtttctttttgataaatccgaggaacagacaaatgcttgttaattaatgagtatatttctcacttaatagttagttct |
43856702 |
T |
|
| Q |
298 |
atgtggttacttgtgtccatgaggtgaaagcttagcgattagagtttgaccttgtaactttgaaggacgaagttcaagtcctctccagaaagttcataaa |
397 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43856703 |
atgtggttacttgtgtccatgaggtgagagcttagcgataagagtttcaccttgtaactttgaaggacgaagttcaagtcctctccagaaagttcataaa |
43856802 |
T |
|
| Q |
398 |
atgatcattagttctgcttcaattaatcaaaatatattatgtatgctaagcttgtacttttgaaggaaaaataaatcatggtgctgcttcaacattcaat |
497 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43856803 |
atgatcattagttctgcttcaattaatcaaaatatattatgtatgctaagcttgtaattttgaaggaaaaataaatcatggtgctgcttcaacattcaat |
43856902 |
T |
|
| Q |
498 |
acattgtgaattgatatttgcaattttaattccttacttaactttgttacagatgcctacagcatgggtggttgcttcccttgtgccaattgctggtgga |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43856903 |
acattgtgaattgatatttgcaattttaattccttacttaactttgttacagatgcctacagcatgggtggttgcttcccttgtgccaattgctggtgga |
43857002 |
T |
|
| Q |
598 |
gtggcgctggcgtctgctacagaggtctctttcaattggtgagtctccttctatgggaagataagaatagaaatg |
672 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43857003 |
gtggcgctggcgtctgctacagaggtctctttcaattggtgagtctccttctatgggaagataagaatagaaatg |
43857077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 14244135 - 14243835
Alignment:
| Q |
1 |
aatgtaaataatgtattttagttcaactgtcatgtgcattgtgcggattatgt----gatatttttgtctttttactgaaagtagaactcaaaattgaaa |
96 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
14244135 |
aatgtaaatattctattttagttcgactgtcatgtgcgttgtgcgaattatgtatgtgatatttttgtctttagactgaaattagaactcaaaattgaaa |
14244036 |
T |
|
| Q |
97 |
aaacaaatgatttattttagcattaatagacacggtggaaccaaaggaaatgtacaaaccaaactgtctcattttattctttatatagttggagctgttt |
196 |
Q |
| |
|
|| ||||||| || |||||||| |||||| | ||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||| ||||| |
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| T |
14244035 |
aa-caaatgactt--tttagcatcaatagatagtgtggaaccaaaggaaatgtacaaacaaatctgtc--attttattttttatatagttggagttgttt |
14243941 |
T |
|
| Q |
197 |
ttgtccttgtctacattttcactgttgtttctttttgataaatccgaggaacagacaaatgcttgattaatgagtatatttctcacttaatagttagttc |
296 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||| ||||||||| ||||||| |||||| || | ||||||||| |||||||| ||||||||||||| |
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| T |
14243940 |
ttgtccttgtctacgttttcactattgttacttgttgataaatatgaggaaccagcaaatg-atggtaaatgagtatgtttctcacataatagttagttc |
14243842 |
T |
|
| Q |
297 |
tatgtgg |
303 |
Q |
| |
|
||||||| |
|
|
| T |
14243841 |
tatgtgg |
14243835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 8e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 1874895 - 1875136
Alignment:
| Q |
17 |
tttagttcaactgtcatgtgcattgtgcggattat----gtgatatttttgtctttttactgaaagtagaactcaaaattgaaaaaacaaatgatttatt |
112 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||| |
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| T |
1874895 |
tttagttcgactctcatgtgcattgtgcggattatttatgtgatatttttgtctttatactgatagtagaactcaaaattgaaaaa-caaatgacttatt |
1874993 |
T |
|
| Q |
113 |
ttagcattaatagacacggtggaaccaaaggaaatgtacaaaccaaactgtctcattttattctttatatagttggagctgtttttgtccttgtctacat |
212 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
1874994 |
ttagcatcaatagacggtgtggaaccaaaggaaatgtacaaacaaatttgtc--attttattctttatatagttggagctgtttttttccttgtctacgt |
1875091 |
T |
|
| Q |
213 |
tttcactgttgtttctttttgataaatccgaggaacagacaaatg |
257 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||| |||||||| |
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|
| T |
1875092 |
tttcactgttgtttcttgttgatagatatgaggaaccgacaaatg |
1875136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 6354685 - 6354385
Alignment:
| Q |
1 |
aatgtaaataatgtattttagttcaactgtcatgtgcattgtgcggattatgt----gatatttttgtctttttactgaaagtagaactcaaaattgaaa |
96 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||||| | ||||||| ||||||| ||||||||||||||| |||||||| |||||||| ||||||||| |
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|
| T |
6354685 |
aatgtaaatattctattttagttcgactgtcatgttcgttgtgcgaattatgtatgtgatatttttgtctttatactgaaattagaactctaaattgaaa |
6354586 |
T |
|
| Q |
97 |
aaacaaatgatttattttagcattaatagacacggtggaaccaaaggaaatgtacaaaccaaactgtctcattttattctttatatagttggagctgttt |
196 |
Q |
| |
|
|| ||||||| || |||||||| ||| || | ||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||| ||||| |
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|
| T |
6354585 |
aa-caaatgactt--tttagcatcaattgatagtgtggaaccaaaggaaatgtacaaacaaatctgtc--attttattttttatatagttggagttgttt |
6354491 |
T |
|
| Q |
197 |
ttgtccttgtctacattttcactgttgtttctttttgataaatccgaggaacagacaaatgcttgattaatgagtatatttctcacttaatagttagttc |
296 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||| ||||||||| ||||||| |||||| || | ||||||||| |||||||| |||||||||||| |
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|
| T |
6354490 |
ttgtccttgtctacgttttcactattgttacttgttgataaatatgaggaaccagcaaatg-atggtaaatgagtatgtttctcacataatagttagttt |
6354392 |
T |
|
| Q |
297 |
tatgtgg |
303 |
Q |
| |
|
||||||| |
|
|
| T |
6354391 |
tatgtgg |
6354385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 672
Target Start/End: Complemental strand, 7563422 - 7563361
Alignment:
| Q |
612 |
tgctacagaggtctctttcaattggtgagt-ctccttctatgggaagataagaatagaaatg |
672 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| |||||||||| ||| ||||||||| |
|
|
| T |
7563422 |
tgctacagaggcctctttcaattggtgagtgttccttgtatgggaagagaagtatagaaatg |
7563361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 672
Target Start/End: Complemental strand, 3011789 - 3011728
Alignment:
| Q |
612 |
tgctacagaggtctctttcaattggtgagt-ctccttctatgggaagataagaatagaaatg |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
3011789 |
tgctacagaggtctctttcaattggtgagtgttccttgtatgggaagagaagaatagaaatg |
3011728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 672
Target Start/End: Original strand, 8767124 - 8767185
Alignment:
| Q |
612 |
tgctacagaggtctctttcaattggtgagt-ctccttctatgggaagataagaatagaaatg |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |
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|
| T |
8767124 |
tgctacagaggtctctttcaattggtgagtgttccttgtatgggaagagaagaatagaaatg |
8767185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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