View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_40 (Length: 349)
Name: NF17903_low_40
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 13050284 - 13050466
Alignment:
| Q |
3 |
aaaccttgacagcaaaaaatctgatttgttaaaccaacgtgagctggatttactaagatttaacacctaccc-gtgtaaatcaccaaacaaaaccacaaa |
101 |
Q |
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| T |
13050284 |
aaaccttgacagcaaagaatcttattagctaaaccac--tgagctggatttactaagatttaacacctactctgagtaaatcaccaaataaaaccacaaa |
13050381 |
T |
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| Q |
102 |
cactcaactaatggtccatgtctgggtgagagatattcggaccaacatctcacggtgagcatatgatacgcgactcgtcaatcat |
186 |
Q |
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| T |
13050382 |
cactcaactaatggtcaatgtcttggtgagagttatttggaccaacatctcacagtgagcatatgatacgcgactcatcaatcat |
13050466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 13050594 - 13050693
Alignment:
| Q |
241 |
acccaggatcatcatccaataagcacaacaaaaatgacagggg-ca-cagagaatagctagcataggtagtagttggagacaaa-cagaagccccatatt |
337 |
Q |
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| T |
13050594 |
acccaggatcatcatccaataagcacaacaaaaatgactggggacataagagaatagctagcacaggtagcagttggagacaaaccagaagccccgtatt |
13050693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 13050524 - 13050567
Alignment:
| Q |
186 |
tcgagagtatttgatctttaaagttttcttgctatacaagaaaa |
229 |
Q |
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| T |
13050524 |
tcgagagtatttgatctttaaagttatcttgctatataagaaaa |
13050567 |
T |
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